Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769295.1_202014-10-10] 78 sequences; 43,168,069 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq44 150 4e-31 seq12 140 8e-28 seq2 138 3e-27 seq73 91.5 4e-13 >seq44 Length=1303881 Score = 150 bits (166), Expect = 4e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || ||||| || || ||||||||||| |||||||| || ||| Sbjct 485629 CAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTCCGAC 485570 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || || || || ||||||||||| Sbjct 485569 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAGCAG 485510 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || || |||||||| ||||| | || || ||| || ||| || Sbjct 485509 CGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAACATC 485450 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || || || || Sbjct 485449 CAGAAGGAGTCCACTCTCCACCTGGT 485424 >seq12 Length=4746347 Score = 140 bits (154), Expect = 8e-28 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 |||||| || || || || || || || |||||||||||||| || ||| |||||||| Sbjct 3789802 TTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 3789861 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 ||| || ||||| ||||| |||||||| || || || || |||||||| || ||||| Sbjct 3789862 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACT 3789921 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 |||||||| || || |||||||| ||||| | ||||| |||| || ||| |||| || Sbjct 3789922 GATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 3789981 >seq2 Length=4137638 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || | || || || || |||||||||||||| || || ||| Sbjct 2555242 CAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCCGAC 2555301 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || ||||| |||||||||||||| || || |||||||| |||||||| Sbjct 2555302 ACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCAGCAG 2555361 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||| | || ||||| || || ||||| || ||||| | || || | ||||| ||| || Sbjct 2555362 CGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAACATC 2555421 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 2555422 CAGAAGGAGTCCACCCTCCATCTCGT 2555447 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||| || || || || |||||||| ||||| | || || || || ||| Sbjct 2555752 CAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCTGAC 2555811 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || || || ||||| ||||| || Sbjct 2555812 ACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAACAG 2555871 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| || || || || || || ||| | || ||| | || || ||| | Sbjct 2555872 CGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAACATT 2555931 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTT 178131 || || || ||||| ||||| |||| || Sbjct 2555932 CAGAAGGAGTCAACTCTGCA-CTTGGTT 2555958 Score = 129 bits (142), Expect = 1e-24 Identities = 160/218 (73%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--- 177980 || |||||||| || |||||||| ||||| || |||||||| ||||| ||| ||| Sbjct 2555980 CAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAA---TCAAGC 2556036 Query 177981 GACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAG 178040 ||||| || || ||||| || |||||||| ||||| || || || || || |||||| Sbjct 2556037 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 2556096 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || ||||||||||| || || ||||| || || || | ||| | ||| || || Sbjct 2556097 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAT 2556156 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 |||| || || || || || || |||||| | |||| Sbjct 2556157 ATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACT 2556194 >seq73 Length=2503951 Score = 91.5 bits (100), Expect = 4e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 214128 GTTTTTCTGGTTGCTTTTGCGGCAAATGGCATCTTTGTATGCGATGAAAGGCATTCCCAC 214187 ||| ||||||||||| |||||| | |||||| ||||| ||||| || |||| Sbjct 1796462 GTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGT 1796521 Query 214188 CTCGACTTGAGCGACAAGAATGTGATGCCAGAGTTCTTGGGCCTTCACGACCTTTTTGGC 214247 |||| || || | || ||| || ||| || | |||||||| | | ||| | | Sbjct 1796522 CTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGACTTGC-GAC 1796580 Query 214248 TCTTCCCT-CGTTTTCGTACTTTTCATAAAGAGACTCAAATTCCGAACCGTAGACATCAT 214306 ||| ||| | | |||||||| || || || | |||||| || ||||||| || Sbjct 1796581 CCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGG 1796640 Query 214307 CAAGACCGGGAGCCTCGTTGGGGCAGAAAAGACTCCATTGTCCATTATCCCTGACTCTTT 214366 ||||||| || |||||||||||| | || |||| | ||| || | | || | | Sbjct 1796641 CAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCT 1796700 Query 214367 TCATGAAAAGGTCGGAAGTCCAGA 214390 ||||||||||||| | |||||| Sbjct 1796701 TCATGAAAAGGTCAGGGATCCAGA 1796724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203729997021132