Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10]
105 sequences; 42,707,783 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq20 174 2e-38
seq14 127 2e-24
>seq20
Length=4904830
Score = 174 bits (192), Expect = 2e-38
Identities = 633/981 (65%), Gaps = 26/981 (3%)
Strand=Plus/Plus
Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764
|||| || || || || ||||| || ||||||| || | || | || ||||||
Sbjct 1799311 GCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCA 1799370
Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824
||||| |||||| | |||||| || | || | || || ||||| ||||||
Sbjct 1799371 GTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAG 1799430
Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884
|||||||| ||||| ||||| || | || || || |||||| || | || || | |
Sbjct 1799431 GCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATAC 1799490
Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTA--TAGTG 53939
|| | | ||||| || || ||| | ||| ||| || ||||| | |
Sbjct 1799491 CAAAGCTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCG 1799547
Query 53940 TATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999
|| | | |||||||| || || | | | | | ||||| || || | || |
Sbjct 1799548 TAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGC 1799605
Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059
|||| | | ||||||||||| | || || || ||||| || || ||||| ||||| |
Sbjct 1799606 ACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGA 1799665
Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119
| || | || || || | || | ||||| || || |||||| ||||| |
Sbjct 1799666 GGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAA 1799725
Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179
||||| | | | ||||| ||||| || || | ||| || | | | | ||||| || |
Sbjct 1799726 GGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCT 1799785
Query 54180 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239
|||| || |||||||| | ||| | || ||||| || | || | | ||| |||| ||
Sbjct 1799786 TGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAA 1799845
Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 54297
||| ||||||| ||| ||||| || | || ||| ||| ||||||| || |
Sbjct 1799846 CACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGG 1799905
Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357
|||| ||||| || || || ||||| || || || | || || || | |||||
Sbjct 1799906 CATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATC 1799963
Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417
|||||| || || || || || ||| |||| | || | || || || | ||| |
Sbjct 1799964 ATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGG 1800023
Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477
|| || || || || || | ||| || ||||| || || || | || || |
Sbjct 1800024 TTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACAT 1800083
Query 54478 TAGATTGTACGTCTC---GATA-GCTGAGTCT-AT-ATCCCATTGATGAATTCCTACTGC 54531
|| ||||| ||||| || | ||| | | | || | ||||| || || | |
Sbjct 1800084 AAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT------ATACCAATAGA 1800137
Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591
|||||||| | |||||||||||| | ||| || |||||| || || || || | |||
Sbjct 1800138 CACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTA 1800197
Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651
||| ||||| || || || ||||| || | |||| || || || ||||| | |||
Sbjct 1800198 TGATCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAAT 1800257
Query 54652 AACTGAGTTGAGTTTATCCTT 54672
| |||| || | |||||
Sbjct 1800258 GGCGGAGTCTAGCTCTTCCTT 1800278
>seq14
Length=1508566
Score = 127 bits (140), Expect = 2e-24
Identities = 373/570 (65%), Gaps = 10/570 (2%)
Strand=Plus/Minus
Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194
|| || || ||| ||| || |||||||| | | || | |||||||| || || |
Sbjct 135626 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 135567
Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254
|||||||| ||||||||||| || ||||| || ||||| ||||| | || |||||
Sbjct 135566 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 135507
Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311
|| || || || || || ||||||| || | || || | | | | |||| ||
Sbjct 135506 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 135447
Query 24312 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370
||||| | || ||||| || ||||||||| | || || || || || | ||| ||
Sbjct 135446 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 135388
Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430
||||| ||| || | | || || | || || ||||| | || ||| |
Sbjct 135387 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 135328
Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490
|| || ||||| || || || ||||| ||||||||||| |||| |||||| | ||
Sbjct 135327 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 135268
Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550
||| || || | ||||| || | | || || || || || || ||| || ||
Sbjct 135267 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 135208
Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 24607
|| || || | | || || || | | ||||| | || | | || |||||
Sbjct 135207 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 135148
Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667
||| | || ||| || || | ||| | || || | ||||| || || ||||| |||||
Sbjct 135147 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 135088
Query 24668 TTTATACATATTCCAGA--TGTCATGATAT 24695
|| ||||| | ||||| ||| | |||||
Sbjct 135087 CTTGTACATTTGCCAGATCTGTGACGATAT 135058
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593720820740400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |