Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq20 174 2e-38 seq14 127 2e-24 >seq20 Length=4904830 Score = 174 bits (192), Expect = 2e-38 Identities = 633/981 (65%), Gaps = 26/981 (3%) Strand=Plus/Plus Query 53705 GCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCA 53764 |||| || || || || ||||| || ||||||| || | || | || |||||| Sbjct 1799311 GCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCA 1799370 Query 53765 GTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACAC 53824 ||||| |||||| | |||||| || | || | || || ||||| |||||| Sbjct 1799371 GTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAG 1799430 Query 53825 GCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGGGATTCTATAATCGCTTTC 53884 |||||||| ||||| ||||| || | || || || |||||| || | || || | | Sbjct 1799431 GCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATAC 1799490 Query 53885 CAGACGACACGAGCCTTTATTATAGATTTGTATCTCTT---TTCTCTTTCGTA--TAGTG 53939 || | | ||||| || || ||| | ||| ||| || ||||| | | Sbjct 1799491 CAAAGCTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCG 1799547 Query 53940 TATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 53999 || | | |||||||| || || | | | | | ||||| || || | || | Sbjct 1799548 TAGAGGGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGC 1799605 Query 54000 ACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAA 54059 |||| | | ||||||||||| | || || || ||||| || || ||||| ||||| | Sbjct 1799606 ACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGA 1799665 Query 54060 GAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGA 54119 | || | || || || | || | ||||| || || |||||| ||||| | Sbjct 1799666 GGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAA 1799725 Query 54120 GGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTT 54179 ||||| | | | ||||| ||||| || || | ||| || | | | | ||||| || | Sbjct 1799726 GGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCT 1799785 Query 54180 TGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAA 54239 |||| || |||||||| | ||| | || ||||| || | || | | ||| |||| || Sbjct 1799786 TGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAA 1799845 Query 54240 TACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACT 54297 ||| ||||||| ||| ||||| || | || ||| ||| ||||||| || | Sbjct 1799846 CACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGG 1799905 Query 54298 AATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 54357 |||| ||||| || || || ||||| || || || | || || || | ||||| Sbjct 1799906 CATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATC 1799963 Query 54358 ATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTG 54417 |||||| || || || || || ||| |||| | || | || || || | ||| | Sbjct 1799964 ATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGG 1800023 Query 54418 ACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG 54477 || || || || || || | ||| || ||||| || || || | || || | Sbjct 1800024 TTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACAT 1800083 Query 54478 TAGATTGTACGTCTC---GATA-GCTGAGTCT-AT-ATCCCATTGATGAATTCCTACTGC 54531 || ||||| ||||| || | ||| | | | || | ||||| || || | | Sbjct 1800084 AAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT------ATACCAATAGA 1800137 Query 54532 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTA 54591 |||||||| | |||||||||||| | ||| || |||||| || || || || | ||| Sbjct 1800138 CACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTA 1800197 Query 54592 GGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 ||| ||||| || || || ||||| || | |||| || || || ||||| | ||| Sbjct 1800198 TGATCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAAT 1800257 Query 54652 AACTGAGTTGAGTTTATCCTT 54672 | |||| || | ||||| Sbjct 1800258 GGCGGAGTCTAGCTCTTCCTT 1800278 >seq14 Length=1508566 Score = 127 bits (140), Expect = 2e-24 Identities = 373/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || ||| ||| || |||||||| | | || | |||||||| || || | Sbjct 135626 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 135567 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAA 24254 |||||||| ||||||||||| || ||||| || ||||| ||||| | || ||||| Sbjct 135566 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 135507 Query 24255 ATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGT 24311 || || || || || || ||||||| || | || || | | | | |||| || Sbjct 135506 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 135447 Query 24312 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | || ||||| || ||||||||| | || || || || || | ||| || Sbjct 135446 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 135388 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||||| ||| || | | || || | || || ||||| | || ||| | Sbjct 135387 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 135328 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 || || ||||| || || || ||||| ||||||||||| |||| |||||| | || Sbjct 135327 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 135268 Query 24491 CTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 24550 ||| || || | ||||| || | | || || || || || || ||| || || Sbjct 135267 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 135208 Query 24551 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 24607 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 135207 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 135148 Query 24608 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 24667 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 135147 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 135088 Query 24668 TTTATACATATTCCAGA--TGTCATGATAT 24695 || ||||| | ||||| ||| | ||||| Sbjct 135087 CTTGTACATTTGCCAGATCTGTGACGATAT 135058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593720820740400