Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 114 1e-20 seq64 102 9e-17 seq31 96.9 4e-15 >seq1 Length=1290987 Score = 114 bits (126), Expect = 1e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 ||||| |||| || |||||| ||||| ||||| |||| || || || |||| ||| Sbjct 575205 ACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCT 575146 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 || ||||| |||||||| || |||||||| ||||| | || | | |||||||||| | Sbjct 575145 AGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGG 575086 Query 43095 ATTTTTTGTTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 || || |||| ||| | | | ||||| || || || || | ||||||||||| Sbjct 575085 ATCTTCGACTTGA-CGTTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTT 575027 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| || ||||||||||| Sbjct 575026 TCCGGTAAGGGTCTTGACGAAGATTTGCAT 574997 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || |||||||||| || || || | || || |||||||| |||||||| Sbjct 574678 CTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAA 574619 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || | |||||||||||| | || | || |||||||||| ||| | || | |||| Sbjct 574618 AATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTGACAT 574560 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || |||| |||||||| ||||| || | ||||| | Sbjct 574559 TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGA 574500 Query 43171 CAAAGATTTGCAT 43183 | ||||||||||| Sbjct 574499 CGAAGATTTGCAT 574487 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || |||||||| || || ||| || |||| || ||||||||||||||||| Sbjct 575416 CTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAA 575357 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||||||||| | || | | |||||||| | ||| | || | | ||| Sbjct 575356 GATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGT-CTTGAATCTTGCTCTTCACGT 575298 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||||| ||||| || || | ||||| || || || || || ||||| | Sbjct 575297 TGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGA 575238 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 575237 CGAAAATCTGCAT 575225 >seq64 Length=1477960 Score = 102 bits (112), Expect = 9e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||| || || | || || |||||||||||||| || Sbjct 659771 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAA 659712 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||||||||||||| | || | || |||||||||| ||| || |||| ||| Sbjct 659711 GATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 659653 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || ||||| || | ||||| || || ||||| || ||||| | Sbjct 659652 TGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 659593 Query 43171 CAAAGATTTGCAT 43183 | || || ||||| Sbjct 659592 CGAAAATCTGCAT 659580 >seq31 Length=4752496 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||||| || | || || ||||||||||||||||| | Sbjct 3795655 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 3795596 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | |||||||| ||||| | || | || |||||||||| ||| || |||| | Sbjct 3795595 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 3795536 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 3795535 CGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGA 3795476 Query 43174 A 43174 | Sbjct 3795475 A 3795475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816849489400