Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq20 107 4e-18 >seq20 Length=4904830 Score = 107 bits (118), Expect = 4e-18 Identities = 247/367 (67%), Gaps = 14/367 (4%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| |||| ||||| | ||||| | ||| | | ||||| ||||| ||| Sbjct 1800269 CTAGACTCCGCCATTGTCTACGACCGTGATTTCCAATACCAATACTTTGGCTTCAAGACG 1800210 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 ||||| ||| || |||||||| ||||| |||||||| || ||||| |||||||||| Sbjct 1800209 TTGGAGCGATCATACCTCCTCAAGATTGACGGCAAGATTGTCGAACGTCCTCAGCACATG 1800150 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 | ||||| ||| || | || || ||||| || ||| | || | ||||| ||| Sbjct 1800149 ATCATGCGTGTGTCTATTGGTATATGGGGTGATGATATTGAGCGTGTCTTGGAGACATAC 1800090 Query 248962 ACCGGAATG---AGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGT 249018 | | ||| || | || | || ||||| | || || ||||||||||| ||| Sbjct 1800089 AACCTTATGTCCAGCAAGTTCT---TCACCCATGCTTCCCCCACCCTCTTCAACGCTGGT 1800033 Query 249019 A-CCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGA 249077 | || ||||| ||||| ||| ||||| | ||| ||| | || ||| | || Sbjct 1800032 ACCCCTCAAC-CCCAGCTTTCCTCATGCTTCTTGGTTGATATGAAGGAGGACAGCATTGA 1799974 Query 249078 CGGCATTTATGACACGCTTAAACAGAC---GGCGAAGATTTCTAAATTCGCGGGCGGAAT 249134 ||| || ||||| || || | |||| || | |||||| || | || || || || Sbjct 1799973 CGGTATCTATGATACCCTCA---AGACCTGTGCCATGATTTCCAAGATGGCTGGTGGTAT 1799917 Query 249135 CGGTCTC 249141 |||||| Sbjct 1799916 TGGTCTC 1799910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764955448640