Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq20 300 1e-76 seq1 109 5e-19 seq64 100 3e-16 >seq20 Length=4904830 Score = 300 bits (332), Expect = 1e-76 Identities = 642/954 (67%), Gaps = 14/954 (1%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || ||||| || || |||||| | || || || || Sbjct 1799317 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 1799376 Query 23087 AGATTGCTACACTTT---ATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 ||||| | | || || ||||| | || |||||||||| || || || || | | Sbjct 1799377 AGATT---AGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCA 1799433 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 |||||||| |||||| | || | || |||||| ||| | ||||| ||| || ||| Sbjct 1799434 TCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAA 1799493 Query 23204 ATAGTCTGAGCGTGAAC--ACGT-CG-CACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 | |||| || | | || | || | | ||||| || ||| ||||||| | ||| Sbjct 1799494 AGCTTCTGGGCCTTGATGGACTTGCGACCCTTACCTTCCCTCT----CGTACTTCTCGTA 1799549 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACAT 23319 | || ||||| || ||||||| |||||||| || || || | | | || ||||| Sbjct 1799550 GAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACAT 1799609 Query 23320 GAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGC 23379 ||| ||||| | || || ||||| || |||| ||||| || || ||||| || || Sbjct 1799610 GAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGC 1799669 Query 23380 GTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAA 23439 |||||| ||||||||||| |||||||| || ||| ||||||| | ||| | || Sbjct 1799670 CAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAA 1799729 Query 23440 GTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATT 23499 || || || || || ||||| ||||| ||||| | ||||| || || |||| ||| || Sbjct 1799730 CTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTT 1799789 Query 23500 GCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 || |||||||| ||||| ||||| ||||||||| | || | |||||| || || | ||| Sbjct 1799790 ACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACC 1799849 Query 23560 GTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTG 23619 |||||| | ||| || || | || || | || || | ||| | | Sbjct 1799850 GTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATT 1799909 Query 23620 GAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGAT 23679 || ||| || || || || || || ||||| || || || || || || ||||| Sbjct 1799910 GAGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGAT 1799969 Query 23680 GCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGG 23739 || || ||||||||||| || | | |||||||| || || || | || | || || Sbjct 1799970 ACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGG 1800029 Query 23740 CGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATT 23799 ||| | || ||| || || ||| || || || ||| | | ||||| || || Sbjct 1800030 GGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTT 1800089 Query 23800 GTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCAT 23859 ||| || || | | | ||||| || || || |||||| || | || ||||| || Sbjct 1800090 GTATGTCTCCAAGACACGCTCAATATCATCACCCCATATACCAATAGACACACGCATGAT 1800149 Query 23860 CATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCAT 23919 ||||| ||||| | ||||| | ||||| ||| |||| || ||||| || | || Sbjct 1800150 CATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAA 1800209 Query 23920 CGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 ||| || || ||||| || | || | || ||||| |||| || ||||| || Sbjct 1800210 CGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGGCGGA 1800263 Score = 104 bits (114), Expect = 2e-17 Identities = 365/564 (65%), Gaps = 7/564 (1%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || ||| || || ||||| || | | ||||| | | |||||||| || |||||||| Sbjct 1798395 CTGGTCGACAGTGAACTGGATAGGGGCGGCGGCAGCCTGTGTGCGAAGGTAGTACATGCC 1798454 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||| ||||| | |||||| || || || || || | || || | || Sbjct 1798455 AGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGCATGCTGGTGATCTTGCCCATCGTGGG 1798514 Query 22225 CAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGC 22284 | ||||| | |||| ||||| ||||||||| || || ||||| ||||| || Sbjct 1798515 ATCCTTCATGTGAATGTTGAGGGACTGGGACTGATCGATGAAAGCACCTCGGTCGGCAGC 1798574 Query 22285 CATATTTATCAATGTA-CGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 ||| | | ||| | ||| || || ||||| || |||||||| || | ||| | Sbjct 1798575 CATCTGGA-CAACCTGGCGCTGAGAAATCTCCCAAACAGTCTTGTAAAGAGCCTTGACGT 1798633 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||| |||| | || ||||||| | || || || || | Sbjct 1798634 CGGCAGGGATGTTGGGGATGTTCTGAATAGAACCGTTATCGGAAATAATACGGTTCTTCA 1798693 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | | ||| |||||| || ||| || | ||| |||| || |||| || || | Sbjct 1798694 TGGCATCAGACCACAAGCCCATGTCGACAAGATCCTTGAGCAACCAGGGGTTGACAACCT 1798753 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | ||||| || | | ||| ||||| |||||||||||||| ||| | || ||||| | | Sbjct 1798754 GGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAGCACT 1798813 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | ||||| ||||| ||||| | ||| || || ||||| || || | || || || Sbjct 1798814 CGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGGAGCAGACTGT 1798873 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTG-AGCATCGACCAGTCCCACAGATCGGAC 22642 | | | ||||| | || | |||| | || || ||||||||| || ||||| Sbjct 1798874 TACGGATACCGTGAGTCTTAA-CATCCTCTCGAAGGCTCTCCCAGTCCCAAAGGTCGGAA 1798932 Query 22643 GGCGTCACATTGTCCCACATATCG 22666 ||| | || || |||||| ||| Sbjct 1798933 GGCTTGAC---GTTCCACATGTCG 1798953 >seq1 Length=1290987 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| |||| ||||| || |||||| |||| ||||| | || Sbjct 574486 CATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTC 574545 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | |||| | ||||| | || ||||||||| ||| | || || ||||| Sbjct 574546 CGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGACCA 574605 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||||||||| ||| | || || || | ||||| || Sbjct 574606 GCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTACAA 574665 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || || || || ||||| || ||| | || | || |||| Sbjct 574666 CATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCGCCTCCGTGGTGGTA 574715 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| |||||||| || || || || |||||| | || || ||| | | Sbjct 575225 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 575284 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || |||||||| || | || || |||||| Sbjct 575285 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 575344 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| |||| ||| | ||| ||||||| || || Sbjct 575345 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGCGACTACAAT 575404 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || || ||||| || || || |||| | |||||| Sbjct 575405 ATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGT 575452 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| ||||| || || || ||||| ||||| | || || || | || Sbjct 574997 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 575056 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||| || | || || ||||| Sbjct 575057 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 575116 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || ||||||||||| || | || ||| || | || || ||| Sbjct 575117 CAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAAC 575176 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || ||||| || |||| ||| | ||| | || |||| Sbjct 575177 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGGTA 575225 >seq64 Length=1477960 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| || || || || ||||||||| | || || || | || Sbjct 659579 CATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCTTC 659638 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | ||||| | || ||||||||| ||| | || || ||||| Sbjct 659639 CGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCA 659698 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || ||||| || ||| | || || || ||||||| || || Sbjct 659699 GCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTACAA 659758 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || || || || ||||| || ||||| || Sbjct 659759 CATCCAGAAGGAGTCCACTCTCCACCTGGTCCT 659791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765814931600