Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq20 156 5e-33 seq14 118 1e-21 >seq20 Length=4904830 Score = 156 bits (172), Expect = 5e-33 Identities = 457/698 (65%), Gaps = 16/698 (2%) Strand=Plus/Plus Query 63221 AGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAA 63280 ||| || || | || ||||| | | ||||||||||| | || || || ||||| || Sbjct 1799589 AGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAA 1799648 Query 63281 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGT 63340 || ||||| ||||| || || | || || || | | | ||||| || || Sbjct 1799649 AAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTG 1799708 Query 63341 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 |||||| ||||| |||||| | | | ||||| ||||| || || | ||| || || Sbjct 1799709 GTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGC 1799768 Query 63401 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 63460 | | | ||||| || ||||| || |||||||| | ||| | || ||||| || | || Sbjct 1799769 AAAAGCACCAGGTCGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGAC 1799828 Query 63461 TCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACT 63520 | | ||| |||| || |||||| ||| |||| |||||||| | || ||| ||| | Sbjct 1799829 ACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGT 1799888 Query 63521 GGCACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 63578 |||||| || | |||| ||||| || || || ||||| || || || | || Sbjct 1799889 GGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAATCATGGCA 1799946 Query 63579 CATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAA 63638 || || | || |||||||| || || ||||| || || |||| | || | || Sbjct 1799947 CAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAG 1800006 Query 63639 CAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 63698 || || | ||| | ||| || || || || || | ||| || ||||| || || Sbjct 1800007 CATGAGGAAAGCTGGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTG 1800066 Query 63699 AACCATTTTTCAGAAAGTAGATTGTACGTCT-CAATA---GCTGAGTCT-AT-ATCCCAT 63752 || | || || | || ||||| |||| ||| | ||| | | | || | ||||| Sbjct 1800067 AAGAACTTGCTGGACATAAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT 1800126 Query 63753 TGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTG 63812 || || | | |||||||| | |||||||||||| | ||| ||||| ||| | Sbjct 1800127 ------ATACCAATAGACACACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCG 1800180 Query 63813 TTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAG 63872 | || || | | ||| ||| ||||| || || || ||||| || | |||| || Sbjct 1800181 TCAATCTTGAGGAGGTATGATCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAA 1800240 Query 63873 TCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTT 63910 || || ||||| | ||| | || | |||| ||||| Sbjct 1800241 TCACGGTCGTAGACAATGGCGGAGTCTAGCTCTTCCTT 1800278 >seq14 Length=1508566 Score = 118 bits (130), Expect = 1e-21 Identities = 371/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || ||| ||| || |||||||| | | || | ||||| || || || | Sbjct 135626 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 135567 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||||||||| || ||||| || ||||| || || | ||| |||||| Sbjct 135566 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 135507 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGT 33758 || || || || ||||| ||||||| || | | || | | | | |||| || Sbjct 135506 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 135447 Query 33759 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 33817 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 135446 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 135388 Query 33818 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 33877 ||||| ||| || | | || || | || || || || | || ||| | Sbjct 135387 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 135328 Query 33878 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 || || ||||| || || || || || ||||||||||| |||| |||||| | || Sbjct 135327 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 135268 Query 33938 CTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGC 33997 ||| || || | ||||| || | | || || || || || |||||| || || Sbjct 135267 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 135208 Query 33998 AAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCA 34054 || || || | | || || || | | ||||| | || | | || ||||| Sbjct 135207 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 135148 Query 34055 ATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 34114 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 135147 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 135088 Query 34115 TTTATACATATTCCAGA--TGTCATGATAT 34142 || ||||| | ||||| ||| | ||||| Sbjct 135087 CTTGTACATTTGCCAGATCTGTGACGATAT 135058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629816773364400