Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq20 176 6e-39 seq14 118 2e-21 >seq20 Length=4904830 Score = 176 bits (194), Expect = 6e-39 Identities = 633/976 (65%), Gaps = 28/976 (3%) Strand=Plus/Plus Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || || || || ||||| || ||||||| || | || | || || |||||||| Sbjct 1799317 GAGGCAAGGTTGCAAACAGCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCAC 1799376 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 || ||| | ||||| || | || | || || ||||| |||||| |||||| Sbjct 1799377 AGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCC 1799436 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 79800 || ||||| ||||| || | || || || |||| | || | || || | ||| | | Sbjct 1799437 TTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAA-G 1799495 Query 79801 ACTC-GAGCCTTTATTATAGACTTGTATCTCTT---TTCTCTTTCGTA-TTGT-GTATAT 79854 || | ||||| || |||||| | ||| ||| || ||||| || | ||| | Sbjct 1799496 CTTCTGGGCCTTGATG---GACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAG 1799552 Query 79855 AATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATC 79914 | || ||||| || || | ||| | | ||||| || |||| || ||||| Sbjct 1799553 GGCC--TCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATG 1799610 Query 79915 AACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 79974 | | ||||||||| | | || || || ||||| || || ||||| ||||| || || Sbjct 1799611 AGGGTCCACTCTCCGTTCTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCC 1799670 Query 79975 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 80034 | || || || | || | |||||| || || |||||| ||||| |||||| Sbjct 1799671 AGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAAC 1799730 Query 80035 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTT 80094 | | | ||||| ||||| || || | ||| || || | | | || ||||| ||||| Sbjct 1799731 TCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTGTTA 1799790 Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 || |||||||| | ||| | || ||||| || | || | | ||| |||| || ||| Sbjct 1799791 CCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCG 1799850 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTG 80212 ||||||||||| ||||| || | || ||| ||| ||||||| || | |||| Sbjct 1799851 TTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTG 1799910 Query 80213 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGA 80272 ||||| || || || ||||| || || || | || || || | |||||||||| Sbjct 1799911 --AGACCAATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGA 1799968 Query 80273 TGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 80332 | || || ||||| || || |||| | || | || || || | ||| | || Sbjct 1799969 TACCGTCAATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAG 1800028 Query 80333 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGAT 80392 || || || || || | ||| || ||||| || || || | || |||| || | Sbjct 1800029 GGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGT 1800088 Query 80393 TGTACGTCT-CAATA---GCTGATTCT-AT-ATCCCATTGATGAATTCCTACCGCGACAC 80446 |||| |||| ||| | ||| | | | || | ||||| || || | | |||| Sbjct 1800089 TGTATGTCTCCAAGACACGCTCAATATCATCACCCCAT------ATACCAATAGACACAC 1800142 Query 80447 GCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATT 80506 |||| | |||||||||||| | ||| || |||||| | || || | | ||| ||| Sbjct 1800143 GCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATC 1800202 Query 80507 TTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCG 80566 ||||| || || || ||||| || | |||| || || || ||||| | ||| | | Sbjct 1800203 GCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAATGGCGG 1800262 Query 80567 AGTTGAGTTTATCCTT 80582 ||| || | ||||| Sbjct 1800263 AGTCTAGCTCTTCCTT 1800278 >seq14 Length=1508566 Score = 118 bits (130), Expect = 2e-21 Identities = 371/570 (65%), Gaps = 10/570 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || ||| ||| || |||||||| | | || || |||||||| || || | Sbjct 135626 CAGGCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAA 135567 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAG 50079 |||||||| ||||||||||| || ||||| || ||||| ||||| | || |||||| Sbjct 135566 CCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAG 135507 Query 50080 ATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATA---ACTGGCGCTGTCATGT 50136 || || || || || || |||||||| || | | || | | | | |||| || Sbjct 135506 ATACCCTCGACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGGTAGAGTCCTTGTCCTGG 135447 Query 50137 ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATT 50195 ||||| | || ||||| || ||||||||| | || || || || || | || || Sbjct 135446 ATCCATCGAATG-GCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTT 135388 Query 50196 AAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACAT 50255 ||||| ||| || | | || || | || || || || | || ||| | Sbjct 135387 GAAGAGGTAGGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGT 135328 Query 50256 TTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 50315 || || ||||| || || || || || ||||||||||| |||| |||||| | || Sbjct 135327 CTCGGAGTGAATATTCTCCATCATGATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGAT 135268 Query 50316 CTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGC 50375 ||| || || | ||||| ||| | | || || || || || || ||| || || Sbjct 135267 CTGGACCTCGCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGC 135208 Query 50376 AAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTA---GTTTATTCCA 50432 || || || | | || || || | |||| | || | | || ||||| Sbjct 135207 GAAGAAGGCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCA 135148 Query 50433 ATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 50492 ||| | || ||| || || | ||| | || || | ||||| || || ||||| ||||| Sbjct 135147 ATCGTGGAGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCAGAAAGAAGCCTCGGCCTT 135088 Query 50493 TTTATACATATTCCAGA--TGTCATGATAT 50520 || ||||| | ||||| ||| | ||||| Sbjct 135087 CTTGTACATTTGCCAGATCTGTGACGATAT 135058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718267857272200