Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq31 104 4e-18 seq14 104 4e-18 >seq31 Length=4752496 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| |||||||| || ||||||||||| ||||| Sbjct 1574517 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 1574575 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||| ||||| ||||||||| | |||| Sbjct 1574576 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATTTCTG 1574616 Score = 95.1 bits (104), Expect = 2e-15 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| ||||||| |||||| || || |||| ||||| Sbjct 1574672 TGATCTACGAGGAGACACGCGGTGTCTTGAAGACCTTCCTTGAGGGTGTCATCCGTGATG 1574731 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || ||| ||||||||||| || || ||||| || || || | ||| ||||||||| Sbjct 1574732 CCGTCACCTACACCGAGCACGCCAAGCGAAAGACAGTGACATCTCTCGATGTCGTCTATG 1574791 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 | | || || |||||||| | |||| ||||| || Sbjct 1574792 CCCTTAAGCGACAAGGCCGCACTCTTTACGGTTTCGG 1574828 >seq14 Length=1508566 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| ||| | | ||||| |||||||| || || |||||||| ||||| Sbjct 408481 GCCAAGCGTCACCGCAAGATTT-TGCGAGACAACATCCAGGGTATTACCAAGCCCGCTAT 408423 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||||||||| ||||||||| | |||| Sbjct 408422 CCGACGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATTTCTG 408382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075103997765