Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq1 125 7e-24 seq64 116 3e-21 seq14 111 1e-19 >seq1 Length=1290987 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | ||| |||||||| || ||||||||||| Sbjct 574713 CCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAG 574654 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| ||| | || || ||||||||||| |||||| Sbjct 574653 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGG 574594 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||||| | || | ||| |||| ||||| | Sbjct 574593 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACC 574534 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | ||| || ||||| | || || ||||| || ||||||| Sbjct 574533 TCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATGA 574485 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || || || | || |||||||| ||||||||||| || Sbjct 575223 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 575164 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||||||| |||||||| ||| |||| | ||||| ||||| ||||| Sbjct 575163 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 575104 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | || || | ||||||| Sbjct 575103 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGACT 575044 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| ||||| || || || ||||| || ||||| Sbjct 575043 TCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 574997 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131037 GGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCC 131096 ||| |||||||| || || ||||| ||||||| ||||| |||||| |||||||| || Sbjct 575422 GGTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACC 575363 Query 131097 TGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTT 131156 ||| |||| | |||||||||||| || || || || || ||||| || || ||| Sbjct 575362 AGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATCTTGCTCTT 575303 Query 131157 GAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGT 131216 | | || | ||| ||| | || |||| || | ||| | || || || || ||||| Sbjct 575302 CACGTTGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGT 575243 Query 131217 TTTTACGAAAATCTGCAT 131234 || |||||||||||||| Sbjct 575242 CTTGACGAAAATCTGCAT 575225 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | ||| | || || ||||| || |||||||| ||| Sbjct 574995 CCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCG 574936 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| || |||| | ||||| ||||| ||||| Sbjct 574935 AGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGA 574876 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| ||| ||||| | || | ||||||| |||||||| Sbjct 574875 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACC 574816 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | || | ||| || || || || || || |||| Sbjct 574815 TCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGACGA 574779 >seq64 Length=1477960 Score = 116 bits (128), Expect = 3e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 || |||||||| || |||||||| ||||||| |||||| ||||| |||||||| || Sbjct 659776 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 659717 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 || |||| | |||||||||||||| || || || || ||||| ||| || |||| Sbjct 659716 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 659657 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| ||||| | || | ||| | || || || || || || Sbjct 659656 ACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTC 659597 Query 131218 TTTACGAAAATCTGCATGA 131236 || |||||||||||||||| Sbjct 659596 TTGACGAAAATCTGCATGA 659578 >seq14 Length=1508566 Score = 111 bits (122), Expect = 1e-19 Identities = 336/510 (66%), Gaps = 13/510 (3%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 || || ||| | || ||||| | |||||||| || |||||| | || | | Sbjct 135403 ATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACTCT 135462 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || || ||| | ||| |||| ||||| || ||| ||||| |||| || || Sbjct 135463 ACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCC 135522 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 |||||| ||||||| | |||| | ||| |||||||||| |||| || |||| Sbjct 135523 TTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCCAAC 135582 Query 46264 GAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTC-TCTACTATAACA- 46321 ||||| || || || ||||||||||| || || |||||||| || | ||| | | || Sbjct 135583 GAGCTCATCTCTCGTGACGAGGGCCTTCACACCGACTTTGCCTGCCTTCTTCACTCCCAT 135642 Query 46322 CTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGAGGCGGTGG 46381 ||| | || | ||| || | | | | | ||| | || || || Sbjct 135643 CTCAAGGGCCGTGCTAGCAAGC-----AGATGATCCAGGACATCATTTGTGATGCCGTCA 135697 Query 46382 CCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCAC 46441 |||||||| ||||||| | || | || || ||| ||||||||| ||||||||| | Sbjct 135698 CCATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCCTGTGCCCTGCTTGGCATGAACTCCA 135757 Query 46442 AGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAG 46500 | ||| | ||||| |||||||| || ||||| || ||||| ||| || || Sbjct 135758 ACCTGATGAAGCAGTACATTGAGTTTGTCGCTGACCGTCTACTCGT--CGCTCTCGGCAA 135815 Query 46501 C-CGAAGCATTTTCACGCGCGC-AATCCATTTGAGTTTATGAACAACATCTCCCTGGAGG 46558 | |||| ||| || | | | || || || || || ||| | ||||||||||| | | Sbjct 135816 CGAGAAG-GTTTACAAGGCCACAAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTG 135874 Query 46559 GCAAAACTAATTTTTTCGAAAAGCGCGTCG 46588 |||| || || || ||||| ||||| |||| Sbjct 135875 GCAAGACCAACTTCTTCGAGAAGCGTGTCG 135904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012180483200