Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1 116 3e-21 >seq1 Length=1290987 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| | ||||| ||| |||||||| | ||||| ||||| ||| Sbjct 574997 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 575056 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| || || ||||| ||||||||| Sbjct 575057 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 575116 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| || || ||||| ||| |||| || | || || | || ||||| Sbjct 575117 CAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAAC 575176 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || || || || || Sbjct 575177 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCT 575208 Score = 114 bits (126), Expect = 1e-20 Identities = 157/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| |||||||| || ||||||| |||| || ||||| || Sbjct 574487 ATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCC 574546 Query 25059 GACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||||||||| || || ||| | || | ||| ||||| || || || || |||||| Sbjct 574547 GACACTATCGA--CAATGTCAAGTCCAAGATTCA-GGACAAGGAGGGCATCCCTCCTGAC 574603 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || ||||| | ||||| || ||||| || | || |||| ||||| | |||||| Sbjct 574604 CAGCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTAC 574663 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || ||||| || ||| | || || Sbjct 574664 AACATCCAGAAGGAGTCCACCCTCCATCTCGTCCT 574698 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 25011 GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATCGAG 25070 || ||||| | || || || ||||||| | || || ||||| || || || ||||| Sbjct 574781 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACCATCGAC 574840 Query 25071 TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATT 25130 | ||| || ||| ||||| || || ||||| || ||||||||||| | || Sbjct 574841 AACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTGATC 574900 Query 25131 TTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAA 25190 ||||| ||||| || | || |||| || || | | ||| ||||| || || || ||| Sbjct 574901 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAA 574960 Query 25191 TCCACGCTACATTTAGTGCT 25210 ||||| || ||| | || || Sbjct 574961 TCCACACTTCATCTCGTCCT 574980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327445475575