Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq14 136 8e-27 seq15 113 9e-20 seq31 107 4e-18 seq42 93.3 9e-14 >seq14 Length=1508566 Score = 136 bits (150), Expect = 8e-27 Identities = 290/429 (68%), Gaps = 18/429 (4%) Strand=Plus/Minus Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601 || || |||| ||||| |||||||| || | |||||| | || ||||| |||| Sbjct 135914 TGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCC 135855 Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661 ||||||||||||||||||||||| ||||| ||| | ||| || || |||| | Sbjct 135854 ATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACGAGTAGA 135795 Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721 ||||| || |||||||| | ||||| |||||| | ||||||||||||| || | Sbjct 135794 CGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCA 135735 Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTG-- 251779 || || | |||||| || ||| |||| || ||| || || | ||||| || Sbjct 135734 CAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCAT----CACAAATGAT 135679 Query 251780 --CCT---TCACCTG--TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCG 251832 ||| ||| ||| ||| || || || || || | |||| || || | Sbjct 135678 GTCCTGGATCATCTGCTTGCTAG-CACGGC----CCTTGAGATGGGAGTGAAGAAGGCAG 135624 Query 251833 CCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCA 251892 |||| | ||| || |||||||| ||| ||||| ||||||||| | || || Sbjct 135623 GCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCG 135564 Query 251893 GGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGA 251952 ||||| | ||||| ||| ||||||||||||| | | ||||| || ||| | | | Sbjct 135563 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 135504 Query 251953 CCCTCGACA 251961 ||||||||| Sbjct 135503 CCCTCGACA 135495 >seq15 Length=2054260 Score = 113 bits (124), Expect = 9e-20 Identities = 433/671 (65%), Gaps = 13/671 (2%) Strand=Plus/Minus Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754 ||| || ||||| || ||||||||||| ||||||||||| || | || ||||| || | Sbjct 1522004 AGTTGGATCTCTTTCTGGTGGTTGGAAAATGAAGCTGGCTCTAGCCCGAGCCATGCTGCA 1521945 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 |||||||||||| || || || || || || || ||||| | || ||||| | || Sbjct 1521944 GCGTGCCGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1521885 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCT--GAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872 ||||| | | |||| || | ||||| | || | | || ||||| |||||| Sbjct 1521884 ATGGCTCGAGACCTATCT--CAAGTCTCACACCGATATCACCAGTCTTATTGTTTCTCAC 1521827 Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932 ||||| || ||| | || ||| | ||| ||| ||||| |||| || |||| Sbjct 1521826 GACTCCGGATTCTTGGACAACGTTACCACTGATATCTACCACTACGAGCCCAACAAGAAG 1521767 Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992 || | ||| ||||||||| |||||||| | ||||||||||| Sbjct 1521766 CTGGCTTGTTACAAGGGCAACCTGAACGCTTTCGTTCAGATCCGCCCTGAGGCCAAGAGT 1521707 Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052 ||||| |||| | | |||| | ||| | |||||| || || || || Sbjct 1521706 TACTACACCCTGTCCGCCTCCACTGTTCAGTTCAAGTTCCCTCCTCCTGGTATTTTGACC 1521647 Query 280053 GGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110 || ||| || | ||| || || || | | ||| |||||| | || || | Sbjct 1521646 GGTGTCAAGTCTCAAACTCGTGCTATTATCCGCATGTCC--AACGTCTCATACGCCTACC 1521589 Query 280111 CCAATGGCCCCAA--CATCT-TC-AGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166 | |||| || || | ||| || || || ||| || || | | | ||| || Sbjct 1521588 CTAATGCACCAAAGCCTTCTCTCGAGGAG-GTCTCCTGTCAACTGACCCTTTCCTCTCGT 1521530 Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226 ||| ||||||| ||||| ||||| || ||||| || || ||||| | || |||||| Sbjct 1521529 GTTGCCATCATTGGCCCCAACGGTGCTGGCAAGTCGACACTTATCAAGCTGCTTACTGGC 1521470 Query 280227 GAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286 |||||| || || || ||| |||||| || ||| | || || | |||| | Sbjct 1521469 GAGACCATTCCCTCTACCGGAAAGGTTGAGAAGCACCCTAACCTCCGTATCGGTTACATT 1521410 Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346 |||||||| | | || | |||| ||| |||| | || |||||||| ||| || Sbjct 1521409 AAGCAGCACGCCCTGGAGCATGTTGAGATGCACTTGGAGAAAACCCCTAACCAGTACCTT 1521350 Query 280347 CAGTGGCGCTA 280357 |||||||| || Sbjct 1521349 CAGTGGCGTTA 1521339 >seq31 Length=4752496 Score = 107 bits (118), Expect = 4e-18 Identities = 159/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 ||||||||||| || ||||| ||||| || || || |||| |||||||| || ||| Sbjct 1944945 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 1944886 Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464 |||| ||| | |||||||||| | || || ||||| ||||||||| || | Sbjct 1944885 CAGACCCATCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 1944826 Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524 || ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | ||| Sbjct 1944825 GGAAAGTCCACTCTTATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 1944767 Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566 ||||| | ||| || | || ||||||||| | |||||| Sbjct 1944766 GGACGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTCC 1944724 >seq42 Length=4624997 Score = 93.3 bits (102), Expect = 9e-14 Identities = 200/297 (67%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGA-TGTGGA---GCGTTCTAT 218573 ||||||||| |||| ||||| ||||| ||| ||||| || | ||| || || Sbjct 2912305 GACTTCATCAACAAAGAGCTTATTCTCTTCA----GTATGGCTGACAACATGCGATCCAT 2912360 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || ||| ||||||| ||||||| ||||| ||| | ||| ||| ||||| Sbjct 2912361 CCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTATGCTTGCTTCAA 2912420 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | ||| |||| | || | ||||| | | | || ||||||||||| |||||| | Sbjct 2912421 AAGAAACTTGGTCAAGGATAAGAAGGTTGTTGAATTGTCTGGTTATGTGTCCGAACAAAC 2912480 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 | ||||| |||||||||||| ||| || |||| ||||| | || ||| ||| Sbjct 2912481 GGCGTACCACCACGGTGAGCAGTCTCTTCAACAGACCATCATAGGCCTTGCTCAGAACTT 2912540 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810 |||||| |||||||| |||| || |||| || | || |||||||| || Sbjct 2912541 TGTGGGTTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACT 2912597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027835417238305