Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10]
105 sequences; 42,707,783 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq14 136 8e-27
seq15 113 9e-20
seq31 107 4e-18
seq42 93.3 9e-14
>seq14
Length=1508566
Score = 136 bits (150), Expect = 8e-27
Identities = 290/429 (68%), Gaps = 18/429 (4%)
Strand=Plus/Minus
Query 251542 TGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCC 251601
|| || |||| ||||| |||||||| || | |||||| | || ||||| ||||
Sbjct 135914 TGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCC 135855
Query 251602 ATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATG 251661
||||||||||||||||||||||| ||||| ||| | ||| || || |||| |
Sbjct 135854 ATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACGAGTAGA 135795
Query 251662 CGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA 251721
||||| || |||||||| | ||||| |||||| | ||||||||||||| || |
Sbjct 135794 CGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCA 135735
Query 251722 CAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTG-- 251779
|| || | |||||| || ||| |||| || ||| || || | ||||| ||
Sbjct 135734 CAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCAT----CACAAATGAT 135679
Query 251780 --CCT---TCACCTG--TGCCAGAGACAGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCG 251832
||| ||| ||| ||| || || || || || | |||| || || |
Sbjct 135678 GTCCTGGATCATCTGCTTGCTAG-CACGGC----CCTTGAGATGGGAGTGAAGAAGGCAG 135624
Query 251833 CCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCA 251892
|||| | ||| || |||||||| ||| ||||| ||||||||| | || ||
Sbjct 135623 GCAAAGTCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCG 135564
Query 251893 GGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGA 251952
||||| | ||||| ||| ||||||||||||| | | ||||| || ||| | | |
Sbjct 135563 GGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATA 135504
Query 251953 CCCTCGACA 251961
|||||||||
Sbjct 135503 CCCTCGACA 135495
>seq15
Length=2054260
Score = 113 bits (124), Expect = 9e-20
Identities = 433/671 (65%), Gaps = 13/671 (2%)
Strand=Plus/Minus
Query 279695 AGTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACT 279754
||| || ||||| || ||||||||||| ||||||||||| || | || ||||| || |
Sbjct 1522004 AGTTGGATCTCTTTCTGGTGGTTGGAAAATGAAGCTGGCTCTAGCCCGAGCCATGCTGCA 1521945
Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814
|||||||||||| || || || || || || || ||||| | || ||||| | ||
Sbjct 1521944 GCGTGCCGATGTTCTCCTCCTGGACGAACCTACTAACCATCTTGATGTTGCCAACATCGC 1521885
Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCT--GAAGAATGTTTCTTCCCTCATTGTCTCTCAC 279872
||||| | | |||| || | ||||| | || | | || ||||| ||||||
Sbjct 1521884 ATGGCTCGAGACCTATCT--CAAGTCTCACACCGATATCACCAGTCTTATTGTTTCTCAC 1521827
Query 279873 GACTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAG 279932
||||| || ||| | || ||| | ||| ||| ||||| |||| || ||||
Sbjct 1521826 GACTCCGGATTCTTGGACAACGTTACCACTGATATCTACCACTACGAGCCCAACAAGAAG 1521767
Query 279933 CTCTCCAAGCACATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCC 279992
|| | ||| ||||||||| |||||||| | |||||||||||
Sbjct 1521766 CTGGCTTGTTACAAGGGCAACCTGAACGCTTTCGTTCAGATCCGCCCTGAGGCCAAGAGT 1521707
Query 279993 TACTATGACCTGAAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAG 280052
||||| |||| | | |||| | ||| | |||||| || || || ||
Sbjct 1521706 TACTACACCCTGTCCGCCTCCACTGTTCAGTTCAAGTTCCCTCCTCCTGGTATTTTGACC 1521647
Query 280053 GGCATCACATCAAAGGATCGCGCAATCAT--GAAGCTCCGTGGCGTCTCCTTTGCTTATC 280110
|| ||| || | ||| || || || | | ||| |||||| | || || |
Sbjct 1521646 GGTGTCAAGTCTCAAACTCGTGCTATTATCCGCATGTCC--AACGTCTCATACGCCTACC 1521589
Query 280111 CCAATGGCCCCAA--CATCT-TC-AGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGG 280166
| |||| || || | ||| || || || ||| || || | | | ||| ||
Sbjct 1521588 CTAATGCACCAAAGCCTTCTCTCGAGGAG-GTCTCCTGTCAACTGACCCTTTCCTCTCGT 1521530
Query 280167 ATTGGTGTCATTGGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGC 280226
||| ||||||| ||||| ||||| || ||||| || || ||||| | || ||||||
Sbjct 1521529 GTTGCCATCATTGGCCCCAACGGTGCTGGCAAGTCGACACTTATCAAGCTGCTTACTGGC 1521470
Query 280227 GAGACCCAGGCCACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTC 280286
|||||| || || || ||| |||||| || ||| | || || | |||| |
Sbjct 1521469 GAGACCATTCCCTCTACCGGAAAGGTTGAGAAGCACCCTAACCTCCGTATCGGTTACATT 1521410
Query 280287 GCTCAGCACGCTTTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATT 280346
|||||||| | | || | |||| ||| |||| | || |||||||| ||| ||
Sbjct 1521409 AAGCAGCACGCCCTGGAGCATGTTGAGATGCACTTGGAGAAAACCCCTAACCAGTACCTT 1521350
Query 280347 CAGTGGCGCTA 280357
|||||||| ||
Sbjct 1521349 CAGTGGCGTTA 1521339
>seq31
Length=4752496
Score = 107 bits (118), Expect = 4e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Minus
Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404
||||||||||| || ||||| ||||| || || || |||| |||||||| || |||
Sbjct 1944945 GGTGAGGATCTTTGCAACTGTACCTTCTCTCTTGCCTACGGTGCCAAGATTCTTCTCAAC 1944886
Query 279405 TCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGCG 279464
|||| ||| | |||||||||| | || || ||||| ||||||||| || |
Sbjct 1944885 CAGACCCATCTCCGCCTCAAGCGTGGTCAGCGTTACGGTCTTTGCGGTCCCAACGGTTCC 1944826
Query 279465 GGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGCA 279524
|| ||| |||||| ||||||||||| |||| ||| | | ||| ||||| | |||
Sbjct 1944825 GGAAAGTCCACTCTTATGCGCGCCATCAACAACGAGCAGGTTG-AGGGTTTCCCCAAGCA 1944767
Query 279525 -TCTGAGGTAAGGACAGTGTATGTAGAGCACGACATCGACTCC 279566
||||| | ||| || | || ||||||||| | ||||||
Sbjct 1944766 GGACGAGGTCAAGACCGTCTTCGTCGAGCACGACCTTGACTCC 1944724
>seq42
Length=4624997
Score = 93.3 bits (102), Expect = 9e-14
Identities = 200/297 (67%), Gaps = 8/297 (3%)
Strand=Plus/Plus
Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTCGCGGTATGA-TGTGGA---GCGTTCTAT 218573
||||||||| |||| ||||| ||||| ||| ||||| || | ||| || ||
Sbjct 2912305 GACTTCATCAACAAAGAGCTTATTCTCTTCA----GTATGGCTGACAACATGCGATCCAT 2912360
Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633
|| ||| ||||||| ||||||| ||||| ||| | ||| ||| |||||
Sbjct 2912361 CCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTATGCTTGCTTCAA 2912420
Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693
| ||| |||| | || | ||||| | | | || ||||||||||| |||||| |
Sbjct 2912421 AAGAAACTTGGTCAAGGATAAGAAGGTTGTTGAATTGTCTGGTTATGTGTCCGAACAAAC 2912480
Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753
| ||||| |||||||||||| ||| || |||| ||||| | || ||| |||
Sbjct 2912481 GGCGTACCACCACGGTGAGCAGTCTCTTCAACAGACCATCATAGGCCTTGCTCAGAACTT 2912540
Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGTCT 218810
|||||| |||||||| |||| || |||| || | || |||||||| ||
Sbjct 2912541 TGTGGGTTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTCGGTTCTCGACT 2912597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027835417238305
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |