Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq64 118 1e-21 seq14 116 4e-21 seq1 114 1e-20 seq31 100 3e-16 >seq64 Length=1477960 Score = 118 bits (130), Expect = 1e-21 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| |||| || ||||| ||| || ||||| || ||| Sbjct 659776 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCA 659717 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | ||||||||| || || || ||||||||||||||| ||| || |||| Sbjct 659716 GCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTG 659657 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| | | |||||| | | ||| || || | ||| | ||| || || || || || Sbjct 659656 ACGTTGT-CAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTCCCCGTGAGGGT 659598 Query 127096 TTTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 659597 CTTGACGAAAATCTGCATG 659579 >seq14 Length=1508566 Score = 116 bits (128), Expect = 4e-21 Identities = 349/532 (66%), Gaps = 15/532 (3%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| | | || | ||| |||||| | || | ||||| || |||||||| Sbjct 135382 CTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGA 135441 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || | || | || || | ||| ||||| || | || ||||| |||||| Sbjct 135442 TGGATCCAGGACAAGGACTCTACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCTGTCGAG 135501 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225 || |||||||| || |||||| | || || | | || | || | ||| Sbjct 135502 GGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATG 135561 Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285 ||||| | || || ||||||||| ||||| | ||||| ||||| |||||| ||||| Sbjct 135562 CCCGGTTTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGCCTTCACACCGACTTT 135621 Query 47286 GCCTGTCT-CT--ACTACAA-CACTAGAGTCGATCAA--AAGTTGGACGTGCCCACCGTC 47339 ||||| || || ||| | | | | || | || | | ||| | || | | Sbjct 135622 GCCTGCCTTCTTCACTCCCATCTCAAGGGCCGTGCTAGCAAGCAGA---TGATC-----C 135673 Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399 || ||||| || || |||||| |||||||| |||||| || | |||||||| ||| Sbjct 135674 AG-GACATCATTTGTGATGCCGTCACCATTGAGCAGGAGTTCCTCACTGAGGCTCTCCCC 135732 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 | | | || |||||| | | |||||| ||||||| || |||||||| ||| Sbjct 135733 TGTGCCCTGCTTGGCATGAACTCCAACCTGATGAAGCAGTACATTGAGTTTGTCGCTGAC 135792 Query 47460 CGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTT 47519 || || ||||| || | ||| ||||| | || || || ||||| || Sbjct 135793 CGTCTACTCGTCGCTCTCGGCAACGAGAAGGTTTACAAGGCCACAAACCCCTTCGACTTC 135852 Query 47520 ATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 47571 ||| | ||||| || || | |||||||||||||| ||||||||||| |||| Sbjct 135853 ATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTCGAGAAGCGTGTCG 135904 >seq1 Length=1290987 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || |||||||| | ||||| ||| || ||||| || ||| Sbjct 574683 GTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCA 574624 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | |||||||||||||| || ||||| ||||||||||||||| || || |||| Sbjct 574623 GCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGACTTG 574564 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | | ||| || |||| ||| | || |||||||||| || Sbjct 574563 ACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTC 574504 Query 127097 TTTACAAAAATCTGCATG 127114 || || || || |||||| Sbjct 574503 TTGACGAAGATTTGCATG 574486 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || ||||| || ||||| ||||| || Sbjct 575223 CCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAA 575164 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || ||||| || || |||||| |||| | |||||| || || ||||| Sbjct 575163 AGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGA 575104 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| ||| ||||| |||| |||| |||||| | |||||| Sbjct 575103 ATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTG-TCGATGGTGTCAGATGACTCGAC 575045 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | ||||| ||||| || || || || || || ||||| Sbjct 575044 TTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 574997 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||| |||| || |||||| || || ||||| || ||| Sbjct 575421 GTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCA 575362 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | |||||||| || || || || ||||||||||| || || ||| Sbjct 575361 GCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCTTGAATCTTGCTCTTC 575302 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||||| || | ||| | || || || || ||||| Sbjct 575301 ACGTTG-TCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGT 575243 Query 127096 TTTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 575242 CTTGACGAAAATCTGCAT 575225 Score = 86.0 bits (94), Expect = 6e-12 Identities = 132/186 (71%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || || || || || ||||| ||| | | || || ||| || ||||| || ||| Sbjct 574965 GTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCA 574906 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| ||||| || |||||||| || |||||||||||| ||| ||| |||| Sbjct 574905 GCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTG 574846 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| |||| ||| || | |||||| || | || | || ||||| || || || Sbjct 574845 ACGTTG-TCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGT 574787 Query 127096 TTTTAC 127101 || || Sbjct 574786 CTTGAC 574781 >seq31 Length=4752496 Score = 100 bits (110), Expect = 3e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| || ||||| || |||||| |||||| |||||| || || || || ||||||||||| Sbjct 3795621 ATCCTCGAGCTGCTTACCAGCGAAGATCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTT 3795562 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | |||| |||||||| |||||| |||| ||| | Sbjct 3795561 GTCCTGGATCTTGGACTTGACATTGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGAT 3795502 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAA 127105 || ||||| ||||| || || || ||| Sbjct 3795501 GGTCTTGCCCGTCAGGGTCTTGACGAAA 3795474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500175905200