Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq20 190 3e-43 seq14 152 6e-32 >seq20 Length=4904830 Score = 190 bits (210), Expect = 3e-43 Identities = 957/1505 (64%), Gaps = 45/1505 (3%) Strand=Plus/Plus Query 115864 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTGGTCGTGTATGGC 115923 |||||||| |||||||| || ||| || | | | || ||||||| ||||| ||| Sbjct 1798744 TTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGC 1798803 Query 115924 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 115983 || |||||||| |||||||||| || || | || ||| || ||||| || || | | Sbjct 1798804 TCGAAGCACTCGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGG 1798863 Query 115984 AGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC-CTTGAGGGCG-TCCCAGTCGT 116041 || || ||||| |||| ||| | ||| | | | || || ||| |||||||| Sbjct 1798864 AGCAGACTGTTACGGATACCGTGAGTCTTAA--CATCCTCTCGAAGGCTCTCCCAGTCCC 1798921 Query 116042 AGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 116101 | | | || | | |||||| || |||||||||||||| | || || || | Sbjct 1798922 AAAGGTCGGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAG 1798981 Query 116102 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGA 116158 | |||| || || || || ||||| ||| ||||| | ||||| || || Sbjct 1798982 AACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG---GCAGTGA 1799038 Query 116159 GGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 116218 |||| ||||| || || |||||||| || | || | | | ||||| || | Sbjct 1799039 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACT 1799098 Query 116219 CAAACGCGAGACGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 116277 | || | | || || | || || |||| || ||||| || ||||| || || || Sbjct 1799099 CGAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATA 1799157 Query 116278 GGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATA 116337 || || || | ||| || || ||||| | ||| || || || |||||| Sbjct 1799158 GGTCGGTGACGCATGTTGCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATG 1799217 Query 116338 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 116397 | | | || | || | ||||||| ||| | ||| ||||| | | ||||| | Sbjct 1799218 ATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATCATA- 1799276 Query 116398 CTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 116454 || || ||| |||| ||| | ||| ||||| | || || || || || ||| Sbjct 1799277 --GCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACA 1799334 Query 116455 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATG 116514 | | |||||| || |||||| || || || || |||| ||| || || ||| Sbjct 1799335 GCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGGATG 1799394 Query 116515 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGC 116574 ||||| | |||||| || || ||| |||||| ||||||||||| ||||| | || Sbjct 1799395 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGG 1799454 Query 116575 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGT 116633 | || ||||| || |||| || ||| || || | ||| | | || | | || | | Sbjct 1799455 TTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTG----AT 1799510 Query 116634 GGCGTTGGCTCGC---CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACC 116690 || ||| | | || ||| ||||||||| |||||||||||||||||||||| | Sbjct 1799511 GGACTTGCGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCA-C 1799569 Query 116691 CACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCT 116749 | ||| || | || || || || | || || | ||| | ||| | || || Sbjct 1799570 CGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCT 1799629 Query 116750 CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGC 116809 |||||| ||||||||||| ||||| ||||||||||| ||| ||| || || || || Sbjct 1799630 TCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGC 1799689 Query 116810 GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCC 116869 | | || || | || || || || | || | || || | || ||| ||||||| Sbjct 1799690 GGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCC 1799749 Query 116870 ACGGTTCCAGGTACACCGCGATTG-AC-----CCCTTGCGACGACCAGCCTGGTTTACAT 116923 | || || ||||| | || | | || | |||| |||| |||| | || | Sbjct 1799750 AAGGCTCAAGGTAGATAGCAAAAGCACCAGGTCGCTTG---TTACCACCCTGATCAACGT 1799806 Query 116924 ACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTG 116983 | | || || ||| || || || ||||| |||| | ||| | ||| || || | Sbjct 1799807 AGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGG 1799866 Query 116984 TCCCCCGAA--TACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCC 117041 | || || || ||| | |||| | || |||| | | ||||||||| || Sbjct 1799867 TACCAGCAATGTAGGAGCC--AGTGGCACGGATTCGGTGGGCATTGAGACCAATACCACC 1799924 Query 117042 TGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTC 117101 ||| ||| || || || || | |||| | | ||||| || || || ||| Sbjct 1799925 AGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTC 1799984 Query 117102 ACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAA 117161 |||| | | | | |||||| || | || || || |||||||||||||| Sbjct 1799985 CTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACCAGCGTTGAA 1800044 Query 117162 GAGGGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAG 117219 |||||| || | || ||| ||| | | |||| |||||| | ||| ||||||||| Sbjct 1800045 GAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATAAGGTTGTATGTCTCCAAG 1800102 Query 117220 ACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGT 117279 ||| ||| || || || ||||| || || || ||||| | ||||| || || Sbjct 1800103 ACACGCTCAATATCATCACCCCATATACCAATAGACACACGCATGATCATGTGCTGAGGA 1800162 Query 117280 GTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCA 117339 ||| | | | || || | | | ||||||| |||||| ||||||| ||| Sbjct 1800163 CGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAACGTCTTGAAGCCA 1800222 Query 117340 AAATA 117344 || || Sbjct 1800223 AAGTA 1800227 >seq14 Length=1508566 Score = 152 bits (168), Expect = 6e-32 Identities = 531/815 (65%), Gaps = 19/815 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| |||| ||||||||||||||||| ||||| ||| | ||| ||| |||||||| Sbjct 135912 GTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 135853 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 || || || ||||| | | || ||| || | | || | | ||| ||| Sbjct 135852 GAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGAC--GAGTAGA 135795 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 || || | ||| |||||||||||| |||| | |||||||| || | ||| | Sbjct 135794 CGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCA 135735 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || ||||| || || || |||| ||| ||||||| || || || | | |||| | Sbjct 135734 CAGGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATGTCC 135675 Query 127469 TGAATAGTGTCCACCCCAG---GTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAAC 127525 || || | | | | || | | ||| | | | |||||| | ||||| Sbjct 135674 TGGATCATCTGCTTGCTAGCACGGCCCTTGAG-ATGGGAGTGAAGAAGGCAG--GCAAAG 135618 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || ||||||||||| |||||||| || || |||||| || ||| |||||| Sbjct 135617 TCGGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATG 135558 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 || || |||||||| | |||||| || | ||| | || ||||||||| ||||| Sbjct 135557 AGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCG 135498 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCACTT 127704 ||| ||||| |||| ||||| | |||||||| | | | |||| | | ||| Sbjct 135497 ACAGCAGCGAAGGCAACCAGACGTTGGGCAAAGG-TAGAGTCCTTGTCCTGGATCCATCG 135439 Query 127705 CATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTC 127764 || ||||| | ||||| || ||| || || | ||| | | || | ||||| | Sbjct 135438 AATGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTA 135379 Query 127765 CTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTG 127824 | | | || || |||||||| | || ||||| ||||| || ||| ||| Sbjct 135378 GGTTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTG 135319 Query 127825 GACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCT 127883 | | | ||| || | || | ||||||| | || || || ||||| |||| Sbjct 135318 AATATTCTCCATCAT-GATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCT 135260 Query 127884 CATCGGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 127942 | | || ||| | | | || ||||| ||||| ||||| || |||| || || Sbjct 135259 C-GCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGCGAAGAAG 135201 Query 127943 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCG 127999 || ||||| | ||||| ||| || | | ||| || | ||||| |||| | Sbjct 135200 GCAAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCAATCGTGG 135141 Query 128000 AGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 |||||||| |||||||| | |||||| |||||||| Sbjct 135140 AGATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 135106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506394771800