Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq17 232 8e-56 seq42 91.5 2e-13 >seq17 Length=3294471 Score = 232 bits (256), Expect = 8e-56 Identities = 459/678 (68%), Gaps = 6/678 (1%) Strand=Plus/Plus Query 7408 CTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTC 7467 ||| ||||||||||| || || | | |||||| | | || | ||||| || || Sbjct 1621457 CTTGTGTTTACGTTTGAATTCGTTAACGAAGTGGCTGACCAGACGGTTGTCGAAGTCCTC 1621516 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || || || | ||||| || |||||||| | |||||| | Sbjct 1621517 ACCACCCAAGTGAGTGTCGCCGGCAGTAGACTTGACCTCGAAGATACCCTCCTCAATGGT 1621576 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTC 7587 | | |||||||| || ||||||||||| || || || ||||| ||||| || | Sbjct 1621577 GAGGAGAGAAACATCGAAGGTACCACCACCGAGATCGAAGATGAGGACGTTGCGCTCACC 1621636 Query 7588 GTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACG 7647 || ||||| ||||||||||| || || || || || || || || || || || || Sbjct 1621637 CTCAACCTTCTTGTCGAGACCGTAGGCAATGGCGGCAGCGGTAGGCTCGTTGATGATTCG 1621696 Query 7648 AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTT 7707 ||| ||| ||||| || || | ||||| || || || || || || || ||||| Sbjct 1621697 GAGAACGTTGAGGCCGGCGATGAGACCAGCATCCTTGGTGGCCTGACGCTGAGAGTCGTT 1621756 Query 7708 AAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGC 7767 |||||||| ||||| || || || |||| |||| ||| |||||| || || || || Sbjct 1621757 GAAGTAGGCAGGGACGGTGACAACAGCGTTGTTGACAGTCTCACCGAGGTAAGACTCAGC 1621816 Query 7768 GATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGT 7827 | || ||| ||||| || | ||| | || ||||| || | | || | ||| | Sbjct 1621817 AGTCTCACGCATCTTGGTGAGGATCATGGCAGAGATCTCCTCGGGAGTGAAGTTCTTCTT 1621876 Query 7828 TTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATA 7887 ||||| || || ||||| || || | ||| || |||| | ||| | | | Sbjct 1621877 CTCACCCTTGAACTCAACCTCGATGACGGGCTT---GCCAGCCTTGTCGATGATGGTGAA 1621933 Query 7888 CGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACG 7947 | | | ||||||||| | || |||| || | ||||| | ||||| | || Sbjct 1621934 GGGGAAGTGCTTCATATCGGCCTGAACCTCAGCATCGGCGAACTTGCGACCGATCAATCG 1621993 Query 7948 CTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCC 8007 ||| || || || || ||||| | |||||||||||| |||||||| || || || || Sbjct 1621994 CTTGGCGTCGAAGACGGTGTTCTGGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCC 1622053 Query 8008 GATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTG 8067 || ||||| || | || || || ||||| | || ||||| || || || || || Sbjct 1622054 AATGAGACGCTC---GGTGTCGGTGAAACCGACGAATGAGGGGGTAGTGCGGTTACCCTG 1622110 Query 8068 GTCGTTCGCAATAATTTC 8085 |||||| || || || || Sbjct 1622111 GTCGTTGGCGATGATATC 1622128 Score = 154 bits (170), Expect = 2e-32 Identities = 365/545 (67%), Gaps = 15/545 (3%) Strand=Plus/Plus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||| ||||| |||||||| |||| | | ||| || |||||||| | | || Sbjct 1921207 AGGTCCTCGAAACGGGCACGGGTGATGGTCATCTGGAAGTCCTCGCCGTCGAAGAGAGAG 1921266 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 || || |||||||| | || || || | ||| || ||||| || |||||||| | Sbjct 1921267 TCGATCTCAATGGTGGCCTGGGCACCGCTGGAGAGG--GTACGCTTGGCACGCTCACAAG 1921324 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || |||||||| | | || || | || ||||| || || Sbjct 1921325 CAGTTCGGAGACGTCGGAGGGCACGGGCATCGCCAGAGAGGTCCTTCTTGGACTTTCGGG 1921384 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 | ||||| | | |||| |||| | || | | ||||| || | |||||||| || Sbjct 1921385 TGAACTCCTTCTTGCAGTGATCGA-GAAGGTTTGTGTCGAAGTCCTGGCCACCCAAATGG 1921443 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || || || || ||||| |||| ||| || | ||||| | | || ||| Sbjct 1921444 GTATCACCAGCAGTGGCCTTGACAGTGAAGACACCACCCTGGATGTTCAGGAGGGAGACA 1921503 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA 7600 || || ||||||||||| || || | ||||| ||||| || | || | | |||| Sbjct 1921504 TCGAAAGTACCACCACCGAGATCGTAGATGAGGACGTTGCGCTC--CTTC-TCGGACTTA 1921560 Query 7601 TCG------AGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || |||||||| || || || || || || || || || || ||||| || | Sbjct 1921561 CCGGCACCAAGACCGTAGGCAATGGCGGCGGCGGTAGGCTCGTTGATGATACGGAGGACG 1921620 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || ||||| || | | || || || || || || || || ||||| |||||| Sbjct 1921621 TTAAGACCAGCGATGGAACCGGCGTCCTTGGTGGCCTGACGCTGGTTGTCGTTGAAGTAG 1921680 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | ||| || | | ||| ||||| ||||| | | || || || || Sbjct 1921681 GCAGGGACAGTGATGACGGCCTTCTCGACCTTCTTGCCGAGCTTGGTCTCGGCAATCTCC 1921740 Query 7775 TTCAT 7779 ||||| Sbjct 1921741 TTCAT 1921745 Score = 114 bits (126), Expect = 2e-20 Identities = 532/844 (63%), Gaps = 3/844 (0%) Strand=Plus/Plus Query 6569 TCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGAT 6628 ||||| || || || ||||| || ||||| || ||| || || || || || || Sbjct 1620391 TCATCCTCCTCCTTGTACTTCTCGGCATCGCTGAGCATGCGCTCGATCTCCTCCTTGGAC 1620450 Query 6629 AATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCA 6688 | | ||||| || || ||||| |||||| | ||| || || | | |||| || | Sbjct 1620451 AGGCGGCCCTTGTCGTTGGTAATGACAATCTTGTTGGACTTTCCAGTGCCCTTCTCGACG 1620510 Query 6689 GCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTA 6748 ||| || |||| ||||| || ||||||| |||||| | || | ||| || || | Sbjct 1620511 GCAGAGACGTTCATGATACCGTTGGCATCAAGATCGAAAGTGACCTCAATCTGGGGAACA 1620570 Query 6749 CCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTC 6808 || | || || | || ||||| || | || || | || | | |||| ||| | Sbjct 1620571 CCACGGGGGGCAGGGGGGATACCAGTGAGCTCGAACTTGCCCATGAGGTTGTTGTCCTTG 1620630 Query 6809 GCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCC 6868 | || || ||||| || ||||| | || || |||| || || || Sbjct 1620631 GTGCGCTGGCGCTCACCCTCGTAGACCTGGATGAGGACGCCAGGCTGGTTGTCGGAGAAG 1620690 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || ||||||| | ||||| | || || || || || | || || | | |||| Sbjct 1620691 GTAGAGAAGACCTCGGACTTCTTGGTGGGGATGGTGGTGTTGCGGGGGATGAGCTTGGTC 1620750 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGG 6988 || |||||||| || || | || ||||| ||||| | || || | || | | Sbjct 1620751 ATCATACCACCAGCGGTCTCAATACCGAGAGAGAGAGGCGCGACATCGAGAAGGAGGATC 1620810 Query 6989 TCTTGAACAGATTCGTTCCCT---TCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 || | || | | | ||||| | | ||| || || ||||| | || ||| Sbjct 1620811 TCGTTGGTGGACTTGCTGGAGGTGTCACCAGACAGGATAGCAGCCTGGACAGCGGCACCG 1620870 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || || |||||||||||||| || | || || | || || ||||| || || || Sbjct 1620871 TAGGCAACAGCCTCATCGGGGTTGATGGACTTGTTGGGCTCCTTTCCGTTGAAGTAGTCG 1620930 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | | | | || | ||||| || || ||||||||||| | ||||| || | Sbjct 1620931 GTGATGAGCTTCTGGACACGGGGGATACGGGTAGATCCACCGACGAGGACGATCTCGTGG 1620990 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || |||||||| | ||| ||| ||||| || | ||| Sbjct 1620991 ACGAGGGACTTGTCGATCTTGGCGTCGGTAAGGACACGGTCGACGGGCTGGATAGTGGAT 1621050 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||| | ||| || || ||||| || || || ||||| ||||| || ||||| || Sbjct 1621051 CGGAAGAGATCCTGGCAAAGCTCCTCGAATCGGGCTCGGGTGATGGAGGTGTAGAAGTCG 1621110 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | || ||| | | || || || || || | || || || | ||||| | |||||| Sbjct 1621111 ATACCCTCGAACAGAGAGTCGATCTCGATAGAGGTCTGAGCGGAAGAAGAAAGGGTTCGC 1621170 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || || |||||||| || || || | ||| || || ||||| ||| ||||| ||| Sbjct 1621171 TTGGCTCGCTCACAAGCAGTGCGGAGACGTCGCAGAGCACGGACGTTGGTGGAAAGATCC 1621230 Query 7406 TTCT 7409 |||| Sbjct 1621231 TTCT 1621234 >seq42 Length=4624997 Score = 91.5 bits (100), Expect = 2e-13 Identities = 223/336 (66%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||||||||| || || || ||| | ||||| || |||| ||| Sbjct 3854309 TCGAAATCCTCACCACCCAAGTGGGTGTCACCGTTGGTGGACTTGACCTCGAAGACACCG 3854368 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || | | | || | ||| || ||||||||||| || || ||| ||| Sbjct 3854369 TTCTGGATCTCAAGGATAGAGATATCGAAGGTACCACCACCAAGATCGTAAACAGCGACG 3854428 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | ||| | || ||| || |||||||| || | || || || || || || Sbjct 3854429 ATGCGGTCGGCCTC------CTTCTCAAGACCGTAGGCAAGGGCGGCAGCGGTAGGCTCG 3854482 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT-TGTCG 7695 || | | ||| ||| ||| || || || || | | ||||| || || ||| ||||| Sbjct 3854483 TTGACGACACGGAGAACGTTGAGACCGGCGATTTGTCCGGCATCCTTGGT-GCTCTGTCG 3854541 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || |||||||| ||||| || || || || ||||| |||| | ||| |||| ||| Sbjct 3854542 CTGAGAATCGTTGAAGTAAGCAGGAACGGTGACGACAGCGTTCTTGATAGGCTTAGAGAG 3854601 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAAC 7791 || | || ||| | || ||||| ||| | || || Sbjct 3854602 GTAGGCCTCGGCGGTCTCCTTCATCTTGTTGAGGAC 3854637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635131966388200