Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq20 219 5e-52 seq14 120 4e-22 seq53 109 7e-19 >seq20 Length=4904830 Score = 219 bits (242), Expect = 5e-52 Identities = 521/774 (67%), Gaps = 35/774 (5%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGG--AAGATATTGATTCTG 111669 || ||| ||||| ||||||| || | || ||||| |||||| | |||||||| || Sbjct 1800161 CCTCAGCACATGATCATGCGTGTGTCTATTGGTAT--ATGGGGTGATGATATTGAGCGTG 1800104 Query 111670 TTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCT 111729 | |||||||||||| || |||||| | | |||| ||| || | || ||||||| Sbjct 1800103 TCTTGGAGACATACAACCTTATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCACCCTCT 1800044 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||||||||| || |||||| | ||| || ||| | ||| | ||||||| Sbjct 1800043 TCAACGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGATATGAAGGAGG 1799984 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | || | || || || | || |||| |||||| || || ||| ||||| Sbjct 1799983 ACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGATGGCTG 1799924 Query 111850 GTGGTATCGGG----ATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 ||||||| || |||| || | | || | |||| | ||| || || | Sbjct 1799923 GTGGTATTGGTCTCAATGCCCACCGAA----TCCGTGCCACT--GGCTCCTACATTGCTG 1799870 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 |||| || ||| ||| | ||| || |||| ||||| || || || ||| ||| || | Sbjct 1799869 GTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCCC 1799810 Query 111964 GCTATGTAAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGC 112017 |||| || | || | ||| | |||| || || | || |||| ||||||| Sbjct 1799809 GCTACGTTGATCAGGGTGG---TAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGC 1799753 Query 112018 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG 112077 | |||||||| ||| || | ||||||||||| | || ||||| ||| | ||||||| Sbjct 1799752 CTTGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGG 1799693 Query 112078 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 112137 || |||||| || ||| || |||||||| || || || ||||||||| | |||| Sbjct 1799692 TCCGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTG 1799633 Query 112138 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCG 112197 || ||| || | ||| | ||| | || || || || || ||||| |||| | Sbjct 1799632 AGAAGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCT 1799573 Query 112198 TGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGA 112257 ||||| |||||||| ||||||||| ||||||||| ||| || || | | || | Sbjct 1799572 ACGGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGG-GTC-GCAA 1799515 Query 112258 CGGTGCCAGC--TGCC--GATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGG 112312 || ||| | ||| || | | ||| | || || ||| || | || |||||||| || Sbjct 1799514 --GT-CCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGG 1799458 Query 112313 TACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAA 112366 | || | ||||||||||| || |||||||||| ||||| || || ||||| Sbjct 1799457 AAACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAA 1799404 >seq14 Length=1508566 Score = 120 bits (132), Expect = 4e-22 Identities = 351/524 (67%), Gaps = 15/524 (3%) Strand=Plus/Plus Query 101817 TGGACTGCTGAAGAGGTAGATCTCTCAAAGGATTTGGACGATTGGAAGACTCTAAATGAA 101876 |||||||| || ||| | |||||||| |||||| | |||||||||| | | ||| Sbjct 135106 TGGACTGCCGAGGAGATTGATCTCTCCAAGGATCTCCACGATTGGAACAACCGTC-TGAC 135164 Query 101877 AA-TGAAAAGAAATTCATAAAAT---ACATCCTGGCATTCTTTGCTGGGTCCGATGGAAT 101932 | ||| || | ||| | | | ||||||| || ||||| |||| || ||||| || Sbjct 135165 CACTGACGAGCAGTTCTTCATCTCTCACATCCTTGCCTTCTTCGCTGCTTCTGATGGCAT 135224 Query 101933 TGTTTTTGAGAATATCAATAA-CAACTTTGCTGATGAGGTGCA-ATCCTCTGAAGCGAGA 101990 ||| ||||| || | | | | | || | ||||| || |||| |||| || || Sbjct 135225 TGTCAACGAGAACCTCGTTGAGCGATTCAGCGGC-GAGGTCCAGATCC-CTGAGGCTCGA 135282 Query 101991 TCTTTCTATGCGTATCAATGTCATAATGAA-ATGGTGCATGGGGAGACATACAGTAAACT 102049 | ||||| | | ||| |||| ||| | | | || ||||| || || Sbjct 135283 TGCTTCTACGGATTCCAAA-TCATGATGGAGAATATTCACTCCGAGACCTATTCCCTGCT 135341 Query 102050 CATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGC-AGCTCTTTGAAGCCATCCAAA 102108 ||| |||| || || ||||| ||| || ||| | | ||||| | || | | | Sbjct 135342 CATTGACACCTACATCAAGGAGCCTGCCCAGC-GAACCTACCTCTTCAACGCTGTTGATA 135400 Query 102109 CAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT-ACAAAGTCG 102167 | |||| || || | |||||| || || ||||| || ||| | | |||| | | Sbjct 135401 CCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCATTCGATGGATCCAGGACAAGGACT 135460 Query 102168 CGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGT 102227 | | ||||||| | || || | || || || ||| ||||||||||||||| ||| Sbjct 135461 C-TACCTTTGCCCAACGTCTGGTTGCCTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGT 135519 Query 102228 TCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCC 102287 |||| | | || | |||||||||||||| || |||||||| ||| | ||||||| Sbjct 135520 GCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCC 135579 Query 102288 AACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| ||||||||||||||||| || ||| || ||||| Sbjct 135580 AACGAGCTCATCTCTCGTGACGAGGGCCTTCACACCGACTTTGC 135623 >seq53 Length=1666795 Score = 109 bits (120), Expect = 7e-19 Identities = 166/230 (72%), Gaps = 10/230 (4%) Strand=Plus/Minus Query 16064 GGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTCGCGAGCGACTTCAA 16119 |||||||| |||||||||||||| || | || ||| | || ||| || | | || Sbjct 1330244 GGCATCAAGTTCATCAATGAAGACAATAGAGGGAGACTTGTTCTTGGCG-GC-AGT--AA 1330189 Query 16120 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 16179 |||| || || || |||||||| || |||||||| || ||||| |||| || | || | Sbjct 1330188 AGAGTTCACGGACTCGCTTGGCTCCAACACCAACGAAGATCTCGTCAAA-TTCACTGCCG 1330130 Query 16180 AACAT-TGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 16238 |||| | || ||| || ||| || |||||| |||| ||||| ||||| || |||||| Sbjct 1330129 GACATGTAGAAGAACGGAACACCAGCTTCACCAGCAACAGCTCGAGCGAGGAGCGTCTTA 1330070 Query 16239 CCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 || ||||| || ||| | |||||| |||| |||| ||||| || Sbjct 1330069 CCGGTACCAGGAGGACCGACCAGGAGGACACCCTTGGGAAGTTTGGCACC 1330020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620741585275600