Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq20 185 3e-41 seq14 132 1e-25 seq17 125 2e-23 seq96 87.8 5e-12 >seq20 Length=4904830 Score = 185 bits (204), Expect = 3e-41 Identities = 584/898 (65%), Gaps = 13/898 (1%) Strand=Plus/Plus Query 155640 ATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTG 155699 |||||| |||||| ||||| || ||||||||| | ||||||||||| || | | Sbjct 1799365 ATCTCAGTGCACAGATTAGAGCTTCGGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGG 1799424 Query 155700 TTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATC 155759 ||||| ||||||||||| || ||| | ||| |||| ||||| |||| || || || || Sbjct 1799425 TTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCTCGGTCTGGGCCTCGAGGATG 1799484 Query 155760 TTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGACTCATATTTC 155819 ||| || | |||| || || |||| | |||||| ||| || ||| Sbjct 1799485 GCATACCAAAGCTTCTGGGCCTTGATGGACTTGCGACCCTTACCTTCCCTCTCGTACTTC 1799544 Query 155820 ATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGG 155879 || || | | || |||||||| || || || |||||||||| | |||| Sbjct 1799545 TCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGG 1799604 Query 155880 CAAAACAGCGACCAAATT---TTATTACCGATTACACGCTCCATAAATACATCACTCGCC 155936 || | || | ||| | || || | | |||||| ||| || | ||| | Sbjct 1799605 CACATGAGGGTCCACTCTCCGTTCTTCTCAA---CACGCTTCATGAAAAGGTCAGGGATC 1799661 Query 155937 CAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGC 155996 || | || ||| ||||| | || |||||| | ||||| ||||| || || Sbjct 1799662 CAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGA 1799721 Query 155997 TCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTC 156056 || | ||| || | ||||| || ||||| || || ||||||||| |||| Sbjct 1799722 TCAAGGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAGATAGCAAAAGCACCAGGT 1799781 Query 156057 CTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGA 156113 | |||| ||||||||||| || || || ||||| || |||||||||| |||||||||| Sbjct 1799782 CGCTTGTTACCACCCTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGA 1799841 Query 156114 ATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTA 156173 | || ||| ||||| || || ||||| || ||| | || |||| | || | Sbjct 1799842 ACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGG 1799901 Query 156174 TGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATTCCTTTACAGT 156232 || || || ||||||||||| | |||| || ||||| || || ||| | || Sbjct 1799902 TGGGCATTGAGACCAATACCACCAG-CCATCTTGGAAATCATGGCACAGGTCTTGAGGGT 1799960 Query 156233 ATTGAAAATACCTTCAATAGAATCATCTTCCAT-TGATAGTAGATAGCACGAACTTAATT 156291 || | ||||| ||||| || || | ||| | | ||| |||| || | | Sbjct 1799961 ATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAACCAAGA-AGCATGAGGAAAGCT 1800019 Query 156292 GAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAG 156351 | ||| | || || ||||||||||| || || || | ||||| | || |||| | | Sbjct 1800020 GGGGTTGAGGGGTACCAGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGG 1800079 Query 156352 ACATATAATCGTATGTCTCCTTAATCTTCTCAAGATTAGACCCGTGAATACAGATAGAGA 156411 ||||| | |||||||||| | ||||| || | || |||| ||||| | Sbjct 1800080 ACATAAGGTTGTATGTCTCCAAGACACGCTCAATATCATCACCCCATATACCAATAGACA 1800139 Query 156412 CCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATG 156471 | | ||| ||| ||||||||||| || |||||| || ||||| || ||||||| Sbjct 1800140 CACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATG 1800199 Query 156472 CGCGTTCCAGAGTTTTAAACCCGAAATAATCAAACAGAAAATCACGGTTGTAATCAAT 156529 || |||| || || || || || || | | | |||||||||| ||| |||| Sbjct 1800200 ATCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGGAAATCACGGTCGTAGACAAT 1800257 >seq14 Length=1508566 Score = 132 bits (146), Expect = 1e-25 Identities = 229/333 (69%), Gaps = 0/333 (0%) Strand=Plus/Plus Query 133339 GATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATAC 133398 |||||| ||||| || || || ||||| || ||||| || |||||||| || | Sbjct 135306 GATGGAGAATATTCACTCCGAGACCTATTCCCTGCTCATTGACACCTACATCAAGGAGCC 135365 Query 133399 CGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAATC 133458 | |||| | | || |||||||| || |||| || || |||||| | Sbjct 135366 TGCCCAGCGAACCTACCTCTTCAACGCTGTTGATACCATTCCCTGCATCCGAAAGAAGGC 135425 Query 133459 TGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGC 133518 ||||||||| ||| |||||||||||||||| | | ||||| ||||| ||||| Sbjct 135426 TGACTGGGCCATTCGATGGATCCAGGACAAGGACTCTACCTTTGCCCAACGTCTGGTTGC 135485 Query 133519 TTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAA 133578 || |||| || ||||| || || ||||| ||||| || ||| || || ||||| || Sbjct 135486 CTTCGCTGCTGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAA 135545 Query 133579 AAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGC 133638 |||||||| | | || || || || || ||||| || || || | ||||||| Sbjct 135546 GAAGCGTGGCCTCATGCCCGGTTTGACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGG 135605 Query 133639 ACTTCACACCGAATTTGCCGTTTTACTTCACTC 133671 ||||||||||| |||||| | |||||||| Sbjct 135606 CCTTCACACCGACTTTGCCTGCCTTCTTCACTC 135638 >seq17 Length=3294471 Score = 125 bits (138), Expect = 2e-23 Identities = 206/295 (70%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 302572 TCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCT 302631 ||||||| | ||||| || || |||||||| ||||| ||| | || || || || Sbjct 1897279 TCTTCCAGAGCCTTGACCAATCGTCGCTGAATGTAACCTGTTTCGGCAGTCTTGACCGCA 1897220 Query 302632 GTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGC 302691 |||||||| ||||| | |||||| |||| || |||||||| | ||| || || Sbjct 1897219 GTATCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTAGGGGTAAGA 1897160 Query 302692 CCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTA 302751 || | || | ||| |||||||||||||||| || ||||| || | || |||||| Sbjct 1897159 CCACGAAGGTAAGAGTTCTCAACGAAACCACGAGCTTCGGGTGAGTAATCATCCTTGGTG 1897100 Query 302752 AAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGC 302811 || || |||||||| | || || | ||| | || ||||| || || ||||| | ||| Sbjct 1897099 AAATGAGGCAGGGTGCGGTACTTGAAACCGAAAGGAATACGTTTGCCTTCAACAATTTGC 1897040 Query 302812 TGTCCCAGGCACGA--AATCATCTGCGAAATATTTAAATCACTGCCCTTGGAGCC 302864 || || | || || | ||||||| ||||| || | | | |||||||| || Sbjct 1897039 TGACC--GACAAGAGCAGTCATCTGTGAAATGTTGATAGAAGAACCCTTGGAACC 1896987 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 301813 AGAATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCA 301872 |||||||| | | ||| || |||||| | || ||||| |||||||| |||||||| Sbjct 1898056 AGAATTTCCTTGAGACGCGGCACACCAAGAGTAACGTT---CTTGGACGACACACCAGCG 1898000 Query 301873 AAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATC 301932 || |||||||||||||| || | || |||| ||||||||||| || || || | Sbjct 1897999 AAATGGAAAGTATTCAGTGTCATCTGGGTAGCGGGCTCACCAATGGACTGGGCAGCCAAA 1897940 Query 301933 ATACCAACCATTTCTCCTGG 301952 | |||||||||||| || || Sbjct 1897939 ACACCAACCATTTCACCAGG 1897920 >seq96 Length=4151235 Score = 87.8 bits (96), Expect = 5e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | || || ||||| | | ||||||| || | ||| | | || Sbjct 472665 ATGAGTCCACAAATTTCGCAGACGTGGACTCGGAAAGCATCCGACACCTCAAACAAACGC 472724 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 |||| ||| || || ||||| | ||||||||||||||| ||||| || ||||| Sbjct 472725 TCCTTCAAGAAAGCAGCAGCGCCGTGAGCAATCATACAATCACGTTCCATCTCTCCGAAT 472784 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTG 251564 || ||||||||||| ||||| | ||| || ||||||| Sbjct 472785 CGGAGACCACCATCTCGAGCACGACCTTCCACAGGCTG 472822 Score = 84.2 bits (92), Expect = 6e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 ||||| || ||||| ||| |||||| || || || ||||| || || ||||| |||| Sbjct 473097 TGGGCAATTGTCATTCGAGAGGGAATGGCGTGAGGGTTGATAATAATATCGGGAGTCAGG 473156 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTG 251957 || || |||| |||||||||| | || ||| | ||||| || |||||||| Sbjct 473157 CCTTCTCTGCTGAAAGGCATATCCTCCTG-TCGATAGGTAACACCAATGGTACCCTTTTG 473215 Query 251958 TCCGTGACGAGAACTGAACTTATCACCAAT 251987 |||||||||||| ||||| |||||||| Sbjct 473216 ACCGTGACGAGAAGCAAACTTGTCACCAAT 473245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471815619945385