Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq75 118 1e-20 seq14 113 6e-19 seq20 109 7e-18 seq53 107 2e-17 >seq75 Length=4106073 Score = 118 bits (130), Expect = 1e-20 Identities = 92/110 (84%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 1592191 CAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGAT 1592250 ||||||||| ||||||||||| || || ||| |||| ||||| | || ||||||||||| Sbjct 2894607 CAACTACCTTGACATCAAGCCCCTCCTTGATGTTGGCTGCAAAACCGTTGCCAACATGAT 2894666 Query 1592251 CAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||||||| || ||||| || |||||||| || ||||||| | ||| Sbjct 2894667 CAAGGGCAAGTCTCCTGAGGAAATTCGCAAGACGTTCAACATCACGAACG 2894716 >seq14 Length=1508566 Score = 113 bits (124), Expect = 6e-19 Identities = 204/290 (70%), Gaps = 15/290 (5%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || ||||| ||| ||| | |||||| |||| | |||||||||||||| |||||| Sbjct 135605 CCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAGGCCACGCTTC 135546 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCAA 869297 |||||||| ||||||| | | || || ||| ||| ||||| |||||||| || || | Sbjct 135545 TTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACAGCAGCGA 135488 Query 869298 AGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATCG 869354 || | | || || | ||||||| || ||| |||||| | |||||| || | Sbjct 135487 AGGCAACCAGACGTTGGGCAAAG--GTAGAG----TCCTTGTCCTGGATCCATCGAATGG 135434 Query 869355 CCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTCC 869413 ||||||| ||||| || | | | || | || || | ||| ||||||| ||| | Sbjct 135433 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGGTTC 135374 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 | ||| || ||||||| |||||||| || || || ||||||||||| Sbjct 135373 -GCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTC 135325 Score = 93.3 bits (102), Expect = 5e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || | || ||| |||||| |||||||||||||| | || ||||| Sbjct 135920 GCCTTCTGGTAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATG 135861 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||| | | |||||| ||| ||| ||||| | || Sbjct 135860 TTCTCCATGAAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGACG 135801 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC 868866 || || ||||| ||||||||||| |||||||| ||| ||| || ||||||||| Sbjct 135800 AGTAGACGGTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCC 135745 >seq20 Length=4904830 Score = 109 bits (120), Expect = 7e-18 Identities = 319/491 (65%), Gaps = 19/491 (4%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || |||||||| || |||| ||| ||||| || ||||| || || | |||||||| Sbjct 1799796 CTGATCAACGTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGA 1799855 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||||| ||| | ||| || | ||| || | || Sbjct 1799856 TGTACCGTTGGTACCAGCAATGTAGGAGCCAGTGGCACGGATTCGGTGGGCATTGAGACC 1799915 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| |||||| || | || || ||||| || || ||||| || || Sbjct 1799916 AATACCACCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTC 1799975 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||| || || | ||||| || || || || || | || || Sbjct 1799976 AATGCTGTCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACC 1800035 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||||||| ||||| | || |||||| |||| | ||||| || ||| || Sbjct 1800036 AGCGTTGAAGAGGGTGGGGGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTTGTATGT 1800095 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | || ||| | | |||| | |||||| || || | || Sbjct 1800096 CTCCAAGACACGCTCAATATCATC-------------ACCCCATA--TACCAATAGACAC 1800140 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||||| ||| || || ||||| | |||| | |||| ||||| || Sbjct 1800141 ACGCATGATCATGTGCTGAGGACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGA 1800200 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTA--GGAAAAGGCAAAATCGCGGTCGTGGCGGATG 1630542 || || ||| ||| ||||||||| || | || ||||| ||||||| | ||| Sbjct 1800201 TCGCTCCAACGTCTTGAAGCCAAAGTATTGGTATTGG--AAATCACGGTCGTAGACAATG 1800258 Query 1630543 GCGGCGTCGAG 1630553 |||| ||| || Sbjct 1800259 GCGGAGTCTAG 1800269 >seq53 Length=1666795 Score = 107 bits (118), Expect = 2e-17 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||| ||||| || || || || || || || ||||| | |||||||| ||| Sbjct 723368 GACAGCACTGGCGGAACCGTCACCTGTGTCATCCGTAATGTGCCCTCTGGCCTCGGTGAG 723309 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 || ||||| |||||| | ||||| | |||||||| |||||| |||| ||||| ||||| Sbjct 723308 CCCTGCTTCGACAAGCTGCAGGCCACCCTCGCCCATGCCATGATGTCCATCCCCGCCACT 723249 Query 19167 AAGGGATTCGAGATTGG 19183 ||||||||||| |||| Sbjct 723248 AAGGGATTCGAACTTGG 723232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107130583208285