Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq64 127 1e-24 seq1 113 3e-20 seq31 98.7 6e-16 >seq64 Length=1477960 Score = 127 bits (140), Expect = 1e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||||||| | ||| ||||||||| ||||| ||||| ||| |||| |||| Sbjct 659791 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 659732 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||| ||||| |||||||| | || | ||||||||||| Sbjct 659731 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 659672 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||| || |||| ||| || ||| Sbjct 659671 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 659612 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 || |||||||||||||| || || ||||||||||| Sbjct 659611 TTCCCCGTGAGGGTCTTGACGAAAATCTGCATGAT 659577 >seq1 Length=1290987 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||||||||||||||| ||||| || ||| | || | || || |||||||| || ||||| Sbjct 575188 CTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAA 575129 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 ||| ||||| || ||||| | || | ||||||||||| | || || |||||| Sbjct 575128 GATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTT 575069 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | ||| | |||||| || | || ||||| ||||| || |||||||| || Sbjct 575068 GTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGAC 575009 Query 34966 AAAGATCTGCAT 34977 ||||| ||||| Sbjct 575008 GAAGATTTGCAT 574997 Score = 109 bits (120), Expect = 4e-19 Identities = 157/219 (72%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || || | |||| ||||||||| ||||| || || || ||| |||| |||| Sbjct 574698 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCC 574639 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || ||||| |||| ||| |||||||| | || | ||||||||||| Sbjct 574638 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 574579 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || ||||| || | ||||| || | ||| || || | ||| || Sbjct 574578 TGAATCTTGGACTTGAC--AT--TGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGAT 574523 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 |||||| || || | |||||| || ||||| |||||||| Sbjct 574522 GGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCATGAT 574484 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| ||| |||||||| ||||| ||||| | ||| | || |||| Sbjct 574980 AGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATCC 574921 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || |||||||| || || ||||| | || | ||||||||||| Sbjct 574920 TCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTCC 574861 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || || |||||| |||| || |||||| Sbjct 574860 TGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGTC 574801 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || ||||||||||| || Sbjct 574800 TTGCCAGTGAGGGTCTTGAC 574781 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || || ||||||| ||| ||||||||| || || ||||| | |||| | || Sbjct 575436 AGAACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGACCGTCC 575377 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| ||||| || |||||||| || || |||||||| | || | ||||||||||| Sbjct 575376 TCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCCTTGTCT 575317 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | || | | ||||| |||| ||| || ||| Sbjct 575316 TGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGATTCGACCTCAAGGGTGATAGTC 575257 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||| ||||| || || |||||||| Sbjct 575256 TTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 575225 >seq31 Length=4752496 Score = 98.7 bits (108), Expect = 6e-16 Identities = 134/185 (72%), Gaps = 8/185 (4%) Strand=Plus/Minus Query 34788 CCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGA 34847 ||||||| ||||| ||||| || || | || |||| || || ||||| || ||||||| Sbjct 3795655 CCTTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 3795596 Query 34848 TCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATG 34907 ||||||| || ||||| | || | ||||||||||| | || || ||||| || Sbjct 3795595 TCAGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGAC--AT- 3795539 Query 34908 CTATCGAT----TCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTT 34963 | ||||| || || |||||| || | ||| |||||||| ||||| |||||||| Sbjct 3795538 -TGTCGATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTG 3795480 Query 34964 ACAAA 34968 || || Sbjct 3795479 ACGAA 3795475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692383214995