Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq20 210 3e-49 seq14 143 3e-29 >seq20 Length=4904830 Score = 210 bits (232), Expect = 3e-49 Identities = 961/1507 (64%), Gaps = 49/1507 (3%) Strand=Plus/Plus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| |||||||| || ||| || | | | || || |||| ||||| ||| Sbjct 1798744 TTGACAACCTGGAACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGC 1798803 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||| |||||||||| || || | || ||| || ||||| || || | | Sbjct 1798804 TCGAAGCACTCGTTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGG 1798863 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC-CTTGAGAGCG-TCCCAGTCGT 118320 || || |||||||||| ||| | | ||| | | | || || || |||||||| Sbjct 1798864 AGCAGACTGTTACGGATACCGTGAGTCTTAA--CATCCTCTCGAAGGCTCTCCCAGTCCC 1798921 Query 118321 AGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCG 118380 | | | || | | |||||| || |||||||||||||| | || || || | Sbjct 1798922 AAAGGTCGGAAGGCTTGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAG 1798981 Query 118381 ATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGA 118437 | |||| || || || || ||||| ||| ||||| | ||||| || || Sbjct 1798982 AACCCTTGAAGGTAGAGTAGGGACCCTCCTCCTTGGCCAACTGCACGGAG---GCAGTGA 1799038 Query 118438 GGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAAT 118497 |||| ||||| || || || ||||| || | || | | | ||||| || | Sbjct 1799039 GGGCAGCGTGGTAGATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACT 1799098 Query 118498 CAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATT 118556 | || | | || || | || || |||| || ||||| || ||||| || || || Sbjct 1799099 CGAAGGGCATGCG-CAGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATA 1799157 Query 118557 GGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATA 118616 || || || | ||| || || ||||| | ||| || || || |||||| Sbjct 1799158 GGTCGGTGACGCATGTTGCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATG 1799217 Query 118617 ACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAA 118676 | | | || | || | ||||||| ||| | ||| ||||| | | ||||| | Sbjct 1799218 ATCTTGTTCAAGTTGCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATCATA- 1799276 Query 118677 CTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACA 118733 || || ||| |||| ||| | ||| ||||| | || || || || || ||| Sbjct 1799277 --GCAAGCCTCATCATAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACA 1799334 Query 118734 GAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATG 118793 | | |||||| || |||||| || || || ||||||| || || || ||| Sbjct 1799335 GCGACCTCATCAGGGGCACAGTACTCGATGATCTCAGTGCACAGATTAGAGCTTCGGATG 1799394 Query 118794 GTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGC 118853 ||||| | |||||| || || ||| |||||| |||||||||||||||||| | || Sbjct 1799395 GTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGG 1799454 Query 118854 GTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACAGT 118912 | || ||||| || |||| || ||| || || | ||| | | || | || | | Sbjct 1799455 TTTCCGGTCTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTG----AT 1799510 Query 118913 GGCGTTGGCTCGCCCCT---CTTC---CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTC 118966 || ||| || |||| |||| ||||||||| ||||||||| ||||||||||| Sbjct 1799511 GGACTTG---CGACCCTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTC 1799567 Query 118967 ACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACC 119026 ||| | || | || || || || | ||||| | ||| | ||| | || Sbjct 1799568 ACCGTAGCAGTCGGCAAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTT 1799627 Query 119027 CTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACA 119086 || |||||| ||||||||||| ||||| ||||||||||| ||| ||| || || || Sbjct 1799628 CTTCTCAACACGCTTCATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGC 1799687 Query 119087 GCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTG 119146 ||| | || || | || || || || | || | || || | || ||| ||||| Sbjct 1799688 GCGGACCTCCTCCTTACCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTG 1799747 Query 119147 CCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACG------ACCAGCCTGGTTTAC 119200 ||| || || ||||| | || | | || | | || |||| |||| | || Sbjct 1799748 CCAAGGCTCAAGGTAGATAGCAAAAGCACC---AGGTCGCTTGTTACCACCCTGATCAAC 1799804 Query 119201 ATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATT 119260 || | |||||| ||| || ||||| ||||| |||| | ||| | |||| || || Sbjct 1799805 GTAGCGGGCAGTGTTGTTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTT 1799864 Query 119261 TGTCCCCCGAA--TACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACCAATACCC 119318 || || || || ||| | | |||| | || |||| | | ||||||||| Sbjct 1799865 GGTACCAGCAATGTAGGAGCC--AGTGGCACGGATTCGGTGGGCATTGAGACCAATACCA 1799922 Query 119319 CCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAG 119378 || ||| ||| || || || || | |||| | | ||||| || || || | Sbjct 1799923 CCAGCCATCTTGGAAATCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTG 1799982 Query 119379 TCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTG 119438 || |||| | | | | |||||| || | || || || |||||||||||| Sbjct 1799983 TCCTCCTTCATATCAACCAAGAAGCATGAGGAAAGCTGGGGTTGAGGGGTACCAGCGTTG 1800042 Query 119439 AAGAGAGTTGGTGTCGCGTGGATGAACATACCTTG--GGACATCTTGTCGTAGGTCTCCA 119496 ||||| || || | || ||| ||| | | |||| |||||| || ||| ||||||| Sbjct 1800043 AAGAGGGTGGGGGAAGCATGGGTGA--AGAACTTGCTGGACATAAGGTTGTATGTCTCCA 1800100 Query 119497 AGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGG 119556 |||| ||| || || || ||||| || || || ||||| | ||||| || | Sbjct 1800101 AGACACGCTCAATATCATCACCCCATATACCAATAGACACACGCATGATCATGTGCTGAG 1800160 Query 119557 GTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGAC 119616 | ||| | | | || || | | | ||||||| |||||| ||||||| | Sbjct 1800161 GACGTTCGACAATCTTGCCGTCAATCTTGAGGAGGTATGATCGCTCCAACGTCTTGAAGC 1800220 Query 119617 CAAAATA 119623 |||| || Sbjct 1800221 CAAAGTA 1800227 >seq14 Length=1508566 Score = 143 bits (158), Expect = 3e-29 Identities = 528/813 (65%), Gaps = 17/813 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| | || ||||||||||||||||| ||||| || | | | ||| |||||||| Sbjct 135911 TAGTCAGCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCATG 135852 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 || || || ||||| | | || ||| | || | | | | ||| ||||| Sbjct 135851 AAGTCGAAGGGGTTTGTGGCCTTGTAAACCTTCTCGTTGCCGAGAGCGAC-GAGTAGACG 135793 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | ||| |||||||||||| |||| | ||||||||| || | ||| ||| Sbjct 135792 GTCAGCGACAAACTCAATGTACTGCTTCATCAGGTTGGAGTTCATGCCAAGCAGGGCACA 135733 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||||| || || || |||| ||| ||||||| || || || | | |||| | || Sbjct 135732 GGGGAGAGCCTCAGTGAGGAACTCCTGCTCAATGGTGACGGCATCACAAATGATGTCCTG 135673 Query 129967 AATGGTCTCCGTGCCAG---GTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023 || ||| | ||| || | | ||| | | | |||||| | |||||| || Sbjct 135672 GATCATCTGCTTGCTAGCACGGCCCTTGAG-ATGGGAGTGAAGAAGGCA--GGCAAAGTC 135616 Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083 ||| || ||||||||||| |||||||| || || |||||| || ||| |||||||| Sbjct 135615 GGTGTGAAGGCCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTCAAACCGGGCATGAG 135556 Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 || |||||||| | |||||| || | ||| | || ||||||||| ||||| || Sbjct 135555 GCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGAC 135496 Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202 | ||||| |||| ||||| | ||||||| | | | |||| | | ||| | Sbjct 135495 AGCAGCGAAGGCAACCAGACGTTGGGCAAAGG-TAGAGTCCTTGTCCTGGATCCATCGAA 135437 Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262 | ||||| | ||||| || ||| || || | ||| | | || | ||||| | Sbjct 135436 TGGCCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTATCAACAGCGTTGAAGAGGTAGG 135377 Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322 | | | || || |||||||| | || ||||| ||||| || ||| || | Sbjct 135376 TTCGCTGGGCAGGCTCCTTGATGTAGGTGTCAATGAGCAGGGAATAGGTCTCGGAGTGAA 135317 Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381 | | ||| || | || | ||||||| | || || || ||||| ||||| Sbjct 135316 TATTCTCCATCAT-GATTTGGAATCCGTAGAAGCATCGAGCCTCAGGGATCTGGACCTC- 135259 Query 130382 TCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGC 130440 | || ||| | | | || ||||| ||||| ||||| || |||| || || || Sbjct 135258 GCCGCTGAATCGCTCAACGAGGTTCTCGTTGACAATGCCATCAGAAGCAGCGAAGAAGGC 135199 Query 130441 CAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCAAG 130497 ||||| | ||||| ||| || | | ||| || | ||||| |||| || Sbjct 135198 AAGGATGTGAGAGATGAAGAACTGCTCGTCAGTGGTCAGACGGTTGTTCCAATCGTGGAG 135139 Query 130498 ATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530 |||||| |||||||| | |||||| |||||||| Sbjct 135138 ATCCTTGGAGAGATCAATCTCCTCGGCAGTCCA 135106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434388303800