Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1 138 3e-27 seq17 125 2e-23 seq64 114 4e-20 >seq1 Length=1290987 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | ||||| | || ||||| ||||| || ||||| || || || Sbjct 575227 CATACCACCACGCAGACGAAGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTC 575168 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | ||||| || || || ||||| || ||||| ||||| || || || || ||||| Sbjct 575167 AGAAAGGGTTCGTCCGTCCTCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGG 575108 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || || ||||| || || | || || || || || | ||||||| || Sbjct 575107 AGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTC 575048 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| | ||| | || |||||||| || || || || || || ||||| Sbjct 575047 GACTTCCAATGTGATGGTTTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 574997 Score = 138 bits (152), Expect = 3e-27 Identities = 173/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | || |||||||| ||||| |||||||| || || ||||| || Sbjct 575458 TTACTGACCGCCACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTA 575399 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || || || || || || || || || ||||| ||||| ||||| ||||| || Sbjct 575398 GTCGCTCAAAGTGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTC 575339 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTT-ACATTATCAATCGAATCAGATG 140682 ||| ||||| || || || || ||||| || ||| || || || ||||| | || || Sbjct 575338 AGGGGGAATACCCTCCTTGTCTTGAATCTT-GCTCTTCACGTTGTCAATAGTGTCGCTTG 575280 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || ||||| || | |||||||| || || || || || ||||||||||| Sbjct 575279 ATTCGACCTCAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 575225 Score = 123 bits (136), Expect = 8e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || ||||| || || ||||| || || || || ||||| Sbjct 574717 CATACCACCACGGAGGCGAAGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATC 574658 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 ||| | || || ||||| ||||| || || ||||| || || | || ||||| ||||| Sbjct 574657 AGAGAGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGG 574598 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || || |||||||| || | || ||||| || || | || || | || Sbjct 574597 AGGGATGCCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTC 574538 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || | ||||| ||||| | || || || || || ||||| Sbjct 574537 AACCTCGAGGGTGATGGTCTTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 574487 Score = 114 bits (126), Expect = 4e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| || || || || || || || | Sbjct 575003 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGT 574944 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | ||||| ||||| ||||| || || ||||||||||| || || || || | Sbjct 574943 AGTCGGCGAGGGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGT 574884 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | |||||||| || || || ||||| || || | || || || || || | ||| || | Sbjct 574883 CGGGAGGAATACCCTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGG 574824 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || ||||| || | ||||| || || || || || || Sbjct 574823 ACTCGACCTCAAGAGTGATGGTCTTGCCAGTGAGGGTCTTGAC 574781 >seq17 Length=3294471 Score = 125 bits (138), Expect = 2e-23 Identities = 433/671 (65%), Gaps = 7/671 (1%) Strand=Plus/Minus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| | || || || |||| ||| | || ||||| Sbjct 1622128 GATATCATCGCCAACGACCAGGGTAACCGCACTACCCCCTCATTCGTCGGTTTCACCGAC 1622069 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| | ||||| ||| | || || || || | || || || | || || Sbjct 1622068 ACCGAGCGTCTCATTGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 1622009 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGA--CAAATCTACACAATCTG 349439 || || || || |||||| | || ||| | | || | || | | | || | | Sbjct 1622008 GTCTTCGACGCCAAGCGATTGATCGGTCGCAAGTTCGCCGATGCTGAGGTTCAGG--CCG 1621951 Query 349440 ATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGG 349499 || | || || || || || || | | | | ||| | || || || | || |||| Sbjct 1621950 ATATGAAGCACTTCCCCTTCACCATCAT-CGACAAGGC--TGGCAAGCCCGTCATCGAGG 1621894 Query 349500 TTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 |||| | || ||||| | || | || ||||| || || || | ||| | | Sbjct 1621893 TTGAGTTCAAGGGTGAGAAGAAGAACTTCACTCCCGAGGAGATCTCTGCCATGATCCTCA 1621834 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || ||| || | |||||| | || | ||||| || || | | |||||| | | Sbjct 1621833 CCAAGATGCGTGAGACTGCTGAGTCTTACCTCGGTGAGACTGTCAACAACGCTGTTGTCA 1621774 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 | || || ||||| || || || | |||||| || || || |||||||| ||| | Sbjct 1621773 CCGTCCCTGCCTACTTCAACGACTCTCAGCGTCAGGCCACCAAGGATGCTGGTCTCATCG 1621714 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | || ||||| |||| || || || || || ||||| || ||||| || || | Sbjct 1621713 CCGGCCTCAACGTTCTCCGAATCATCAACGAGCCTACCGCTGCCGCCATTGCCTACGGTC 1621654 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | || || | | ||| || || | || || || ||| | ||||||||||| | Sbjct 1621653 TCGACAAGAAGGTTGAGGGTGAGCGCAACGTCCTCATCTTCGATCTCGGTGGTGGTACCT 1621594 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 | ||||| || || || || |||| ||||| || || || || || | ||||| || | Sbjct 1621593 TCGATGTTTCTCTCCTCACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACTGCCGGCG 1621534 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 | || || | ||||| || || || || || ||||| || || || ||||| |||| Sbjct 1621533 ACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTGGTCAGCCACTTCGTTAACGAAT 1621474 Query 349920 TTAAGCGTCAA 349930 | || ||| || Sbjct 1621473 TCAAACGTAAA 1621463 Score = 107 bits (118), Expect = 6e-18 Identities = 107/138 (78%), Gaps = 3/138 (2%) Strand=Plus/Minus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 || ||||||||| | ||||| ||| || || | |||||||| || ||||||||||| Sbjct 1898041 CGCGGCACACCAAGAGTAACGTTC---TTGGACGACACACCAGCGAAATGGAAAGTATTC 1897985 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| |||||||||||| ||||| || || | ||| ||||||||||| Sbjct 1897984 AGTGTCATCTGGGTAGCGGGCTCACCAATGGACTGGGCAGCCAAAACACCAACCATTTCA 1897925 Query 377578 CCAGGATTGACAATAGCC 377595 ||||| || || | |||| Sbjct 1897924 CCAGGGTTCACGAAAGCC 1897907 Score = 102 bits (112), Expect = 2e-16 Identities = 170/246 (69%), Gaps = 0/246 (0%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||| | || || | | |||||| ||| ||||| |||| ||| || || || Sbjct 1897280 ATCTTCCAGAGCCTTGACCAATCGTCGCTGAATGTAACCTGTTTCGGCAGTCTTGACCGC 1897221 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 ||||||||| | ||| | |||||| |||| || |||||||| || || |||| ||||| Sbjct 1897220 AGTATCAATAAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGCTAGGGGTAAG 1897161 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 |||| || | || |||||| || || | || | || || | ||||| || || Sbjct 1897160 ACCACGAAGGTAAGAGTTCTCAACGAAACCACGAGCTTCGGGTGAGTAATCATCCTTGGT 1897101 Query 378381 ATAATGAGGTAATGTACGATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCTG 378440 ||||||| | || || | || || || | ||||| ||||| || |||||| | || Sbjct 1897100 GAAATGAGGCAGGGTGCGGTACTTGAAACCGAAAGGAATACGTTTGCCTTCAACAATTTG 1897041 Query 378441 TTGACC 378446 ||||| Sbjct 1897040 CTGACC 1897035 >seq64 Length=1477960 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || ||||| ||||| || || || || || || Sbjct 659810 CATACCACCACGGAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 659751 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || || ||||| || || || || ||||||||||| || || ||||| || || Sbjct 659750 GCTCAGGGTGCGGCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGG 659691 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||||| || || || ||||| || || | || || || ||||| | || || | || Sbjct 659690 GGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTC 659631 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| || || || || || || ||||||||||| Sbjct 659630 CACCTCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 659580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515252361509315