Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq20 268 1e-66 seq42 170 2e-37 >seq20 Length=4904830 Score = 268 bits (296), Expect = 1e-66 Identities = 499/727 (69%), Gaps = 18/727 (2%) Strand=Plus/Minus Query 53233 GCGTGTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAAC 53292 ||||||| ||||| ||| || | ||| | |||| ||| || || || | || || Sbjct 1800108 GCGTGTCTTGGAGACATACAACCTTATGTCCAGCAAGTTCTTCACCCATGCTTCCCCCAC 1800049 Query 53293 CCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAA 53352 ||| |||||||||||||| ||| || ||| | || |||||| |||| | ||||| Sbjct 1800048 CCTCTTCAACGCTGGTACCCCTCAACCCCAGCTTTCCTCATGCTTCTTGGTTGATATGAA 1799989 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| || ||||| ||||| || || |||||| |||||| || |||||| Sbjct 1799988 GGAGGACAGCATTGACGGTATCTATGATACCCTCAAGACCTGTGCCATGATTTCCAAGAT 1799929 Query 53413 GTCGGGTGGTATCGGTATCCACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAG 53470 | | |||||||| ||| || | ||| | | || ||||||| | ||| | || Sbjct 1799928 GGCTGGTGGTATTGGTCTCAA-TGCCC-ACCGAATCCGTGCCACTGGCTCCTACATTGCT 1799871 Query 53471 GGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 || || ||||| || | || | || |||||||| || |||||||||||||| ||| Sbjct 1799870 GGTACCAACGGTACATCCAACGGTGTTGTTCCTATGCTACGTGTCTTCAACAACACTGCC 1799811 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || ||||| | ||||||||| ||||| || | || || |||||||| ||||| Sbjct 1799810 CGCTACGTTGATCAGGGTGGTAACAAGCGACCTGGTGCTTTTGCTATCTACCTTGAGCCT 1799751 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 |||||||| || | | ||||| || || || || ||| || ||| | || ||| | Sbjct 1799750 TGGCACGCTGATGTCTTTGAGTTCCTTGATCTCCGAAAGAACCACGGTAAGGAGGAGGTC 1799691 Query 53651 CGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG 53710 ||| ||| |||||||| || || ||||| || ||||| |||||| | || ||| Sbjct 1799690 CGCGCCCGCGACCTGTTCCTGGCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAG 1799631 Query 53711 AAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGG-CCTCCAGGGTGTCTA 53769 ||| ||| |||||| ||| |||||||| ||||||||||| || | | | | || ||| Sbjct 1799630 AAGAACGGAGAGTGGACCCTCATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTG-CTA 1799572 Query 53770 CGGTGAGGAGTTTAACGAGATGTATCGGACGTAC------GCAGTTCAGGGCCGCTACAA 53823 |||||| |||||| | | | || || |||| | || | |||| ||| Sbjct 1799571 CGGTGAAGAGTTTGAGGCCCTCTACGAGAAGTACGAGAGGGAAGGTAAGGGTCGC----- 1799517 Query 53824 GAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGG 53883 ||| ||||||| | || | ||| |||| |||||| || |||| ||||| || Sbjct 1799516 -AAGTCCATCAAGGCCCAGAAGCTTTGGTATGCCATCCTCGAGGCCCAGACCGAGACCGG 1799458 Query 53884 AACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGG 53943 || || | |||| ||||||||| | ||| |||||||||||||||||| |||| Sbjct 1799457 AAACCCCTTCATGCTTTACAAGGATGCCTGTAACCGCAAGAGCAACCAGAAGAACCTCGG 1799398 Query 53944 CGTCATC 53950 | |||| Sbjct 1799397 CACCATC 1799391 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Minus Query 55728 TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCTGATTGAC---ATGA 55784 |||||| ||||| ||| || ||||||||| | ||| | | | ||| | ||| Sbjct 1798630 TCAAGGCTCTTTACAAGACTGTTTGGGAGATTTCTCAGC---GCCAGGTTGTCCAGATGG 1798574 Query 55785 GTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAATC 55844 ||| || || ||||| | |||||| ||||||||||| || ||||| |||| || ||| Sbjct 1798573 CTGCCGACCGAGGTGCTTTCATCGATCAGTCCCAGTCCCTCAACATTCACATGAAGGATC 1798514 Query 55845 CTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGG 55904 | | ||| |||| | | | |||||||| ||| |||||| || |||||||| | Sbjct 1798513 CCACGATGGGCAAGATCACCAGCATGCACTTCGCCGGCTGGAAGCTTGGTCTCAAGACTG 1798454 Query 55905 GTATGTACTATCTGCGGAC 55923 | |||||||| || || || Sbjct 1798453 GCATGTACTACCTTCGCAC 1798435 >seq42 Length=4624997 Score = 170 bits (188), Expect = 2e-37 Identities = 225/310 (73%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 117293 GGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGC 117352 |||| |||||| || || |||||||||| || |||||||| |||||| ||||| || Sbjct 2912651 GGTGATAGGCGGGTAAAGATGTAACGAGGACTGGCAGCATCAGAGCCACCGGCAAGTCGA 2912592 Query 117353 GTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGA 117412 | |||||| | |||||| ||||||||| ||| | |||||| | ||||||||||| ||| Sbjct 2912591 GAACCGAAGTTTCCACTGGGCTCCAAGCAGTTGATGTTGTTTGAACCCACAAAGTTCTGA 2912532 Query 117413 GCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCC 117472 || | | | || || ||| || | |||||| ||||| |||||||| || || Sbjct 2912531 GCAAGGCCTATGATGGTCTGTTGAAGAGACTGCTCACCGTGGTGGTACGCCGTTTGTTCG 2912472 Query 117473 GCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGC 117530 | ||| || || | || | | | |||||| | || |||| || ||| | |||| || Sbjct 2912471 GACACATAACCAGACAATTCAACAACCTTCTTATCCTTGAC--CAAGTTTCTTTTGAAGC 2912414 Query 117531 AGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAAC 117590 | ||||| || ||||||||||||| ||||| | ||||||| ||| ||||| || | Sbjct 2912413 AAGCATAGATAACCTTGCGCTGACCAGGCTTGAAACCATCCAAAACGGACGGGATGGATC 2912354 Query 117591 GCTTGATGTC 117600 || || |||| Sbjct 2912353 GCATGTTGTC 2912344 Score = 96.9 bits (106), Expect = 4e-15 Identities = 299/456 (66%), Gaps = 14/456 (3%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || |||||||| || || ||||||||||| |||| ||| |||| || ||||| |||| | Sbjct 2912792 CCTGTACCGATACCATCGGCACCGTTGACGAGAACCATGGGCAGGATTGGGGCATAAACC 2912733 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTG--TCAGCC- 151992 ||| || | || | || || || || | | || || ||| ||| || Sbjct 2912732 ATCGGTTCAATCTTCTTGCCATCTTCGTA---GTGATGGATAA--GATTTGGCTCATCCA 2912678 Query 151993 --GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTG--AAGATGTATCGGGAGCT 152048 || | ||| ||| || | || ||| | | | ||| | |||||||| || | || Sbjct 2912677 TGGGGTGGAAGATCTTGCGGG-CAAAGGG-TGATAGGCGGGTAAAGATGTAACGAGGACT 2912620 Query 152049 GGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTT 152108 ||| ||||| |||||| || || || | || || | |||| |||||| | | ||| Sbjct 2912619 GGCAGCATCAGAGCCACCGGCAAGTCGAGAACCGAAGTTTCCACTGGGCTCCAAGCAGTT 2912560 Query 152109 GAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGC 152168 || |||||| | ||||| || |||||||| | | || || || ||| | Sbjct 2912559 GATGTTGTTTGAACCCACAAAGTTCTGAGCAAGGCCTATGATGGTCTGTTGAAGAGACTG 2912500 Query 152169 TTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCAT 152228 ||||||||||| |||||||| || || | | || || | ||| | | |||||| | Sbjct 2912499 CTCACCGTGGTGGTACGCCGTTTGTTCGGACACATAACCAGACAATTCAACAACCTTCTT 2912440 Query 152229 GTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAA 152288 ||| | || ||| | |||| || || || || ||||||||||| || || || Sbjct 2912439 ATCCTTGACCAAGTTTCTTTTGAAGCAAGCATAGATAACCTTGCGCTGACCAGGCTTGAA 2912380 Query 152289 ACCGTCCACCACGTGAGGAATCGAACGCTTGATGTC 152324 ||| |||| ||| || || || ||| || |||| Sbjct 2912379 ACCATCCAAAACGGACGGGATGGATCGCATGTTGTC 2912344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215281779000