Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq20 340 2e-88 seq1 185 1e-41 seq64 176 5e-39 seq42 159 4e-34 seq31 129 7e-25 >seq20 Length=4904830 Score = 340 bits (376), Expect = 2e-88 Identities = 946/1428 (66%), Gaps = 56/1428 (4%) Strand=Plus/Plus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||| || || ||| || ||| | || | ||| | ||||||||||| || |||| Sbjct 1798756 AACTCACCAGCAAGGACTCGGCGCTGGTAAATGTTGGAGGTGTAAGGCTCGAAGCACTCG 1798815 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || || ||||| | || || || || ||||| ||| | | | ||| || Sbjct 1798816 TTGTTACCCAGAATCTGCGAGGTACTGGCAGTAGGCATAGGGGCAAGGAGCAGACTGTTA 1798875 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCAAC---CCCAACG 80532 || | ||||| |||| | |||||| || || || || | ||| | || | Sbjct 1798876 CGGATACCGTGAGTCTTAACATCCTCTCG-AAGGCTCTCCCAGTCCCAAAGGTCGGAAGG 1798934 Query 80533 CTGTGACC--CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590 || |||| |||||||||| ||| | ||| ||||| || || ||||| ||| ||| | Sbjct 1798935 CT-TGACGTTCCACATGTCGAACTGGAGGATACCCTCAGAGGCGGGAGAACCCTTGAAGG 1798993 Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCA-TAAGGGCCGCGTGATAA 80649 | ||| || |||||| |||||||| || |||| || | ||||| ||||| || Sbjct 1798994 TAGAGTAGGGACCCTCCTCCTTGGCCAACTG-CACGGAGGCAGTGAGGGCAGCGTGGTAG 1799052 Query 80650 ATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCC 80709 ||| |||||||| |||||| | | | |||| ||| ||||| | || || | Sbjct 1799053 ATGGTCTCAAAGATCTGCTTGTTGAGCTCTCTAGCCTCTGGAGACTCGAAGGGCATGCGC 1799112 Query 80710 ATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTG 80769 | | ||| | ||||| || ||||| || || | |||| || ||||| ||| || Sbjct 1799113 AGAGCAAGGAAAGCATCAGCAAGACCCTGTACACCAAGACCGATAGGTCGGTGACGCATG 1799172 Query 80770 TTCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTT 80828 || | | || ||||| | | ||||| ||| |||||||| ||||| ||| Sbjct 1799173 TT-GCTGTTGCGAGCCTCTTGCACAGGGTAGTGGTTGACATCGATGATCTTGTTCAAGTT 1799231 Query 80829 GCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCC-CTTCA 80887 ||| ||||||| | | || | ||| || |||| || || || | || | ||| Sbjct 1799232 GCGGACAACAACCTGACTGACCTGATGCAGCTTCTTGAAATC--ATAGCAAGCCTCATCA 1799289 Query 80888 CA-------AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAG-- 80938 | || || || ||| ||||| || || ||||| || || ||||| |||| Sbjct 1799290 TAGTTGATGAAAGCAGGCAGGGCAAGGGAGGCAAGGTTGCAAACAGCGACCTCATCAGGG 1799349 Query 80939 -CATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTA--ATTGTACCCAGGT 80995 || | ||| ||||| ||| || ||||||| |||||| ||| || || || |||| Sbjct 1799350 GCA-CAGTA--CTCGATGATCTCAGTGCACAGATTAGAG--CTTCGGATGGTGCCGAGGT 1799404 Query 80996 TTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCT 81055 | |||||||| |||| ||| || || |||||||| |||| | ||| | ||||||| Sbjct 1799405 TCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGTCT 1799464 Query 81056 CGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATT 81115 || ||| | || ||||||||| | ||||| || | ||||||| |||||| | Sbjct 1799465 CGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGACTTGCGACCCT 1799524 Query 81116 TGCCTTCGGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGT-GAAGTTCAGTG 81174 | ||||| | | ||||| |||| | || |||| |||||| | ||| | | Sbjct 1799525 TACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGT-CGGCA 1799583 Query 81175 AGGTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTC 81234 || | ||||||||||| |||||||| ||| ||| || || ||||| ||| |||| Sbjct 1799584 AGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTTC 1799643 Query 81235 ATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCA 81294 |||||| |||||||||||||||||| ||||||||||||| ||| ||||||| | | Sbjct 1799644 ATGAAAAGGTCAGGGATCCAGAGGGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTA 1799703 Query 81295 CCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATAC 81354 || ||||| || | || || || || | || || || ||||| ||||| || || Sbjct 1799704 CCGTGGTTCTTTCGGAGATCAAGGAACTCAAAGACATCAGCGTGCCAAGGCTCAAGGTAG 1799763 Query 81355 ACGGCGATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCG 81408 | || | | || | |||| | |||||||| | ||||| |||||||| | Sbjct 1799764 ATAGCAAAAGCACCAGGTCGCTTGTTA---CCACCCTGATCAACGTAGCGGGCAGTGTTG 1799820 Query 81409 TTAAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGC 81468 || || ||||| | |||||| | | ||| | || |||||| ||||| | || Sbjct 1799821 TTGAAGACACGTAGCATAGGAACAACACCGTTGGATGTACCGTTGGTACCAGCAATGTAG 1799880 Query 81469 GACCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAA 81526 || || |||| || | | || |||| ||||| || ||||| | | ||| |||| Sbjct 1799881 GAGCCAGTGGCACGGATTCGGTGGGCATTG--AGACCAATACCACCAGCCATCTTGGAAA 1799938 Query 81527 TCTGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAA 81586 || ||||| || | ||| ||||| || || || ||||| || | ||||| |||| Sbjct 1799939 TCATGGCACAGGTCTTGAGGGTATCATAGATACCGTCAATGCTGTCCTCCTTCATATCAA 1799998 Query 81587 GCAAGAAACAGCTTGACATCTGAGGGCTTTTTGAG-----CCGGCATTGAACAGTGTTGG 81641 |||||| || || | ||| || ||||| || || ||||| || || || Sbjct 1799999 CCAAGAAGCATGAGGAAAGCTGGGG-----TTGAGGGGTACCAGCGTTGAAGAGGGTGGG 1800053 Query 81642 GGTCGCGTGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAAT 81701 || || || |||| | | | ||||| |||| || || ||| ||| || ||| Sbjct 1800054 GGAAGCATGGGTGAAGAACTTGCTGGACATAAGGTTGTATGTCTCCAAGACACGCTCAAT 1800113 Query 81702 ATCGTCACCGTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| ||||| ||||| |||| |||||||| | ||||| ||| || Sbjct 1800114 ATCATCACCCCATATACCAATAGACACACGCATGATCATGTGCTGAGG 1800161 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 80032 GCCCGCGTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGC 80091 ||| | || || || ||||||||||| |||||||| || |||||||||| | |||| Sbjct 1798429 GCCTGTGTGCGAAGGTAGTACATGCCAGTCTTGAGACCAAGCTTCCAGCCGGCGAAGTGC 1798488 Query 80092 ATAGAACTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGA 80151 || ||| ||| | | ||||| | || |||| ||||| || ||||| |||||| Sbjct 1798489 ATGCTGGTGATCTTGCCCATCGTGGGATCCTTCATGTGAATGTTGAGGGACTGGGACTGA 1798548 Query 80152 CAGATGAAAGCCCCACGATCTGCCGCCAT 80180 ||||||||| || || || || ||||| Sbjct 1798549 TCGATGAAAGCACCTCGGTCGGCAGCCAT 1798577 >seq1 Length=1290987 Score = 185 bits (204), Expect = 1e-41 Identities = 170/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || |||||||| || ||||||||||| ||||| |||| ||| | Sbjct 574781 GTCAAGACCCTCACTGGCAAGACCATCACTCTTGAGGTCGAGTCCTCCGATACCATCGAC 574840 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || |||||||||||||| |||||||| ||||| ||||| || || Sbjct 574841 AACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCCGACCAACAGCGCCTGATC 574900 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||| ||||| || ||||||| || ||||| || ||||| || |||| |||||| Sbjct 574901 TTTGCTGGCAAGCAGCTTGAGGATGGCCGAACCCTCGCCGACTACAACATCCAGAAGGAA 574960 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| |||||||| ||| | || ||||| ||||| Sbjct 574961 TCCACACTTCATCTCGTCCTCCGCCTTCGTGGTGG 574995 Score = 172 bits (190), Expect = 6e-38 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||||||||| |||||||| | ||||||||||| || || || ||||||||||| Sbjct 574484 ATCATGCAAATCTTCGTCAAGACCTTGACCGGCAAGACCATCACCCTCGAGGTTGAGTCT 574543 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | || | ||| | ||| | || ||||||||||||||||| || ||||| ||| Sbjct 574544 TCCGACACTATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGAC 574603 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 |||||||| | ||||| ||||| ||||| || ||||||| || ||||| | || || Sbjct 574604 CAGCAGCGATTGATTTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCTCTGATTAC 574663 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| || ||||| ||| | || || || ||||| Sbjct 574664 AACATCCAGAAGGAGTCCACCCTCCATCTCGTCCTTCGCCTCCGTGGTGG 574713 Score = 161 bits (178), Expect = 1e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || |||||||| || |||||||| || ||| | Sbjct 575225 ATGCAGATTTTCGTCAAGACTCTCACTGGAAAGACTATCACCCTTGAGGTCGAATCAAGC 575284 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| || ||||| || ||||| ||||||||||| ||||| || |||||| Sbjct 575285 GACACTATTGACAACGTGAAGAGCAAGATTCAAGACAAGGAGGGTATTCCCCCTGACCAG 575344 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 |||||||| || || ||||||||||| || ||||| | ||| || | ||| ||||| || Sbjct 575345 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGCACTTTGAGC-GACTACAA 575403 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | |||| ||||| || || ||||| || || | || ||||| || || || Sbjct 575404 TATCCAGAAGGAGTCTACCCTTCACCTTGTTCTCCGACTTCGTGGCGGTCA 575454 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| |||||||| || || || || | || || |||||| | Sbjct 574997 ATGCAAATCTTCGTCAAGACCCTTACCGGAAAAACCATCACATTGGAAGTCGAGTCATCT 575056 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || | ||| | || || |||||||||||||| |||||||| ||||| Sbjct 575057 GACACCATCGACAACGTCAAGTCGAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAA 575116 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| |||||||| ||||| | || ||||| | ||||| || Sbjct 575117 CAGCGACTTATCTTCGCTGGCAAGCAACTAGAGGACGGACGAACCCTTTCTGACTACAAC 575176 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || ||||| || | || | ||||| || ||||| Sbjct 575177 ATTCAGAAGGAGTCAACTCTGCACTTGGTTCTTCGTCTGCGTGGTGG 575223 >seq64 Length=1477960 Score = 176 bits (194), Expect = 5e-39 Identities = 179/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || |||||||| || || || ||||| || || |||||||| ||||| Sbjct 659577 ATCATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 659636 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||||| || | ||| | || || |||||||||||||| ||||| || ||| Sbjct 659637 TCCGACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGAC 659696 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTA 27581 |||||||| || || |||||||||||||| |||||||||| || ||||| ||| ||||| Sbjct 659697 CAGCAGCGACTTATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGCACCCTGAGC-GACTA 659755 Query 27582 TAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| |||||||| || || ||| | || || || ||||| Sbjct 659756 CAACATCCAGAAGGAGTCCACTCTCCACCTGGTCCTCCGCCTCCGTGGTGG 659806 >seq42 Length=4624997 Score = 159 bits (176), Expect = 4e-34 Identities = 235/329 (71%), Gaps = 4/329 (1%) Strand=Plus/Plus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || ||| ||||| || ||| ||| || |||||||| ||||||||||| || || Sbjct 2912349 CATGCGATCCATCCCGTCCGTTTTGGATGGTTTCAAGCCTGGTCAGCGCAAGGTTATCTA 2912408 Query 32019 CGCCTGCCTCAAGAAGAACCT--GTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTAC 32076 || ||| |||| ||||| || ||| || || | |||||| | | |||| || || Sbjct 2912409 TGCTTGCTTCAA-AAGAAACTTGGTCAAG-GATAAGAAGGTTGTTGAATTGTCTGGTTAT 2912466 Query 32077 GTGGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAAC 32136 ||| | || |||||||| || |||||||| ||| ||| || || ||||| | | Sbjct 2912467 GTGTCCGAACAAACGGCGTACCACCACGGTGAGCAGTCTCTTCAACAGACCATCATAGGC 2912526 Query 32137 CTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTT 32196 ||||||||||||||||| ||| |||| ||| | |||| | ||||| |||| | || Sbjct 2912527 CTTGCTCAGAACTTTGTGGGTTCAAACAACATCAACTGCTTGGAGCCCAGTGGAAACTTC 2912586 Query 32197 GGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTC 32256 || | || || ||||||||| |||||||| || | ||||||||||| ||||| || Sbjct 2912587 GGTTCTCGACTTGCCGGTGGCTCTGATGCTGCCAGTCCTCGTTACATCTTTACCCGCCTA 2912646 Query 32257 GCACCTTCGACGCGCAAGATTTTCGACCC 32285 |||| | | |||||||| ||| |||| Sbjct 2912647 TCACCCTTTGCCCGCAAGATCTTCCACCC 2912675 >seq31 Length=4752496 Score = 129 bits (142), Expect = 7e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || |||||||| || || |||||||| || || || ||||| ||||| || | ||| Sbjct 3795475 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCATC 3795534 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | || || |||||||||||||| ||||| || ||||| ||||| || Sbjct 3795535 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGACTG 3795594 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAG 27594 || || ||||||||||| |||||||||| || || || | ||||| || |||| ||| Sbjct 3795595 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAAG 3795654 Query 27595 G 27595 | Sbjct 3795655 G 3795655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309651467600