Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq17 86.0 5e-12 >seq17 Length=3294471 Score = 86.0 bits (94), Expect = 5e-12 Identities = 200/294 (68%), Gaps = 17/294 (6%) Strand=Plus/Plus Query 29759 TGAGGGTCGTAACCCTCCAGGGAGAAATCCTCTGCCTTAAAGTCGTCCAGGCTCTCCACC 29818 |||||||| ||||||| | || |||||| ||||| || | |||| | ||| ||||| Sbjct 300563 TGAGGGTCATAACCCTTGACGGTGAAATCTTCTGCTTTCCAACCGTCAATGCT-TCCACT 300621 Query 29819 CTCCTGTTTATC-------CTC-AG-TGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGA 29869 || ||| || ||| || | |||||| | || ||||| | ||| || || Sbjct 300622 CT----TTTCTCGAGAAATCTCTAGCTCTGGGAA-GTCTCGCGGCTCGCGCTCCAGTTGG 300676 Query 29870 GTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAA-A 29928 |||| || | || |||| || ||||| || ||||| || |||| ||| || | Sbjct 300677 ATCTTAAGAGCATCAACGTGGTCGAGGTACACATGAGCATCACCCATAACATGGGTAAGA 300736 Query 29929 CTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGC 29988 || ||| || | || | ||||| || | ||||| || | || | ||| || || Sbjct 300737 CT-TCCAGGAACCAGGTCACAAACGTGCGCAAGCATGTGTGTCAATAGGGCGTAACTAGC 300795 Query 29989 GATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACA 30042 ||||| ||||| || ||||| |||||||| | ||||||||||| | |||||| Sbjct 300796 AATGTTGAAGGGAACACCGAGACCCATGTCGCAAGACCTCTGGTACAACTGACA 300849 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/229 (70%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 30233 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30292 ||||| || || || || | ||||||||| || ||||| || ||||| || || |||| Sbjct 301079 TACTCGGCACCAAAGTGTCGCCACTGGAAACCATACACAGGGCCCAGATCGCCAACTTCA 301138 Query 30293 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTT- 30351 | || | | || ||||| | || || | ||| || ||| ||||||||||||| Sbjct 301139 CGATGGTTCAGTCCGAGGTTGTCAAGGAACTCGCGGGAGCCATTGCCGTCCCAGATCTTA 301198 Query 30352 -TACCCCCTTCTCAGAGAGCTCTTTGGAG-TTTGTGGACCCTCTGACGAACCACAGCAGC 30409 |||| |||| | ||| ||| || | || | ||| | ||||| || |||||| || ||| Sbjct 301199 ATACCGGCTTCGCTGAG-GCTGTTGGAAGATGTGTTG-CCCTC-GATGAACCAGAGGAGC 301255 Query 30410 TCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 || | || ||||| |||||| | || || |||||||| |||| Sbjct 301256 TCGGCGACAACGGCGCGAGTAAAGACACGTTTCGTGGTGAGGAGAGGAA 301304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406309880049660