Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1 181 2e-40 seq64 170 4e-37 seq31 138 3e-27 seq20 116 9e-21 >seq1 Length=1290987 Score = 181 bits (200), Expect = 2e-40 Identities = 166/210 (79%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || ||||| ||||| || || |||||||| || || || ||||| Sbjct 574990 ACGAAGGCGGAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGT 574931 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || ||||||||||| || ||||| ||||| |||||||| ||||||| || Sbjct 574930 TCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACC 574871 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || ||||| |||||||| || ||| || ||||| || Sbjct 574870 CTCCTTGTCCTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAG 574811 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 |||||| ||||| || ||||| ||||| || Sbjct 574810 AGTGATGGTCTTGCCAGTGAGGGTCTTGAC 574781 Score = 163 bits (180), Expect = 7e-35 Identities = 174/226 (77%), Gaps = 8/226 (4%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATC-CGCAAGGG 210951 |||||||| || ||||||||||| || ||||| || ||||| || || || | ||| | Sbjct 575446 ACGAAGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGCTCAAAG- 575388 Query 210952 TCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTC 211011 | | || || ||||||||||| || ||||||||||| || || |||||||| |||| | Sbjct 575387 TGCGACCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATAC 575328 Query 211012 CTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCT 211068 | |||||||| || ||||| |||||||| || || ||||| |||| || |||| Sbjct 575327 CCTCCTTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTC---GCTTGATTCGACCT 575271 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 | || ||||| |||||||| ||||||||||| || || | |||||| Sbjct 575270 CAAGGGTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 575225 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||| ||||| || || ||||| || || | |||||| | ||| || Sbjct 575208 AGAACCAAGTGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCC 575149 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| ||||||||||| || |||||||||||||||| || ||||||||| Sbjct 575148 TCTAGTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCC 575089 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||||| || || || | ||||| || Sbjct 575088 TGGATCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTT 575029 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || ||||| || || | ||||| Sbjct 575028 TTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 574997 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || || |||||||| || |||||||| ||||| | ||||| | ||||| Sbjct 574698 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCC 574639 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||||||||| ||||| || | || || ||||||||||| | || ||||||||| Sbjct 574638 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 574579 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || ||||| ||||| || ||||||||||| ||||| ||| Sbjct 574578 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 574519 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | ||||| Sbjct 574518 TTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 574487 >seq64 Length=1477960 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||||||||| || |||||||| || || ||||| | ||||| Sbjct 659791 AGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCC 659732 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || || |||||||| || || ||||| || |||| || ||||||||| Sbjct 659731 TCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCC 659672 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| || || ||||| || ||||||||| Sbjct 659671 TGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 659612 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| ||||| || || | |||||| Sbjct 659611 TTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 659580 >seq31 Length=4752496 Score = 138 bits (152), Expect = 3e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || | || || | ||||| || |||||||| || |||||||| Sbjct 3795653 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 3795594 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 || || |||||||| || |||| || ||||||||||||||||| || || || ||| Sbjct 3795593 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 3795534 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| ||| || |||||||| ||||| ||||| ||||| || ||||| || || Sbjct 3795533 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 3795475 >seq20 Length=4904830 Score = 116 bits (128), Expect = 9e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 178093 GTTCTTTTGGTTGCTCTTTCTGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCCCAC 178152 |||||| ||||||||||| | | | |||||| ||||| |||||||| |||| Sbjct 1799403 GTTCTTCTGGTTGCTCTTGCGGTTACAGGCATCCTTGTAAAGCATGAAGGGGTTTCCGGT 1799462 Query 178153 CTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTTGGC 178212 ||| | || ||| |||| ||| || |||||||| |||||| || | ||| | Sbjct 1799463 CTCGGTCTGGGCCTCGAGGATGGCATACCAAAGCTTCTGGGCCTTGATGGACTTGCGACC 1799522 Query 178213 TTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATCATC 178272 || ||||| |||||||||| | |||||| |||| || || || ||| || | Sbjct 1799523 CTTACCTTCCCTCTCGTACTTCTCGTAGAGGGCCTCAAACTCTTCACCGTAGCAGTCGGC 1799582 Query 178273 GAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCGTTT 178332 ||||| || ||| |||||||| | ||| |||||| |||| | || || || || Sbjct 1799583 AAGACCAGGGCACTCGTTGGGGCACATGAGGGTCCACTCTCCGTTCTTCTCAACACGCTT 1799642 Query 178333 CATGAAGAGGTCAGAGGTCCAGATGGC 178359 |||||| ||||||| | |||||| ||| Sbjct 1799643 CATGAAAAGGTCAGGGATCCAGAGGGC 1799669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159150440578325