Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20avenaceum_20[genbank_20GCA_5F000769305.1_202014-10-10] 105 sequences; 42,707,783 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq64 116 9e-21 seq1 111 4e-19 seq31 89.7 1e-12 seq20 89.7 1e-12 >seq64 Length=1477960 Score = 116 bits (128), Expect = 9e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | |||||| || || ||||| ||||| || ||||||||||| ||| | || | Sbjct 659798 GAGGCGGAGGACCAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCG 659739 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 ||||| || || || || || |||||||| | ||||||||||| | || || || Sbjct 659738 GCCATCCTCGAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCCGGGGGAATGCCCTC 659679 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| ||| ||| || ||||| || Sbjct 659678 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCGGAAGACTCCACCTCAAGGGT 659619 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || |||||||| ||||| ||||| | |||||| Sbjct 659618 GATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 659580 >seq1 Length=1290987 Score = 111 bits (122), Expect = 4e-19 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||| ||||| ||||| |||||||| || ||||| ||||| ||| ||||| | Sbjct 575442 AGTCGGAGAACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCGCTCAAAGTGCGA 575383 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || || ||||||||||| | ||||||||| | | || || ||| Sbjct 575382 CCGTCCTCCAGCTGCTTACCAGCGAAGATAAGACGCTGCTGGTCAGGGGGAATACCCTCC 575323 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTC---TGAACTCTCTACTTCAAGA 152063 || |||||||| || || || | || | |||| ||| || || ||||| Sbjct 575322 TTGTCTTGAATCTTGCTCTTCACGTTGTCAATAGTGTCGCTTGA---TTCGACCTCAAGG 575266 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||| ||||| | |||||| Sbjct 575265 GTGATAGTCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 575225 Score = 100 bits (110), Expect = 7e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| |||||||| || || || || ||||||||||| ||||| | |||| ||||| Sbjct 574981 GAGGACGAGATGAAGTGTGGATTCCTTCTGGATGTTGTAGTCGGCGAGGGTTCGGCCATC 574922 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || || || ||||| || | ||| ||||| | | || || ||||| || Sbjct 574921 CTCAAGCTGCTTGCCAGCAAAGATCAGGCGCTGTTGGTCGGGAGGAATACCCTCCTTGTC 574862 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | | || || ||| || |||||||| || || Sbjct 574861 CTGGATCTTCGACTTGACGTTGTCGATGGTATCGGAGGACTCGACCTCAAGAGTGATGGT 574802 Query 152072 TTTGCCCGTGAGAGTCTTCACGA 152094 ||||| ||||| ||||| |||| Sbjct 574801 CTTGCCAGTGAGGGTCTTGACGA 574779 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| || || ||||| || |||||||||||||| | | || | ||||| Sbjct 574698 AGGACGAGATGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGAGAGGGTGCGGCCATCC 574639 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || ||||| || | | ||||||||| | | ||| || ||||| || Sbjct 574638 TCAAGCTGCTTGCCAGCGAAAATCAATCGCTGCTGGTCAGGAGGGATGCCCTCCTTGTCC 574579 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 ||||| || |||||| | || | |||| ||| ||| || || || || || || Sbjct 574578 TGAATCTTGGACTTGACATTGTCGATAGTGTCGGAAGACTCAACCTCGAGGGTGATGGTC 574519 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | ||||| ||||||| ||||| Sbjct 574518 TTGCCGGTCAAGGTCTTGACGAAGATTTGCAT 574487 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || ||||| ||||| || || |||||||| || | | |||| || || |||| Sbjct 575203 CAAG-TGCAGAGTTGACTCCTTCTGAATGTTGTAGTCAGAAAGGGTTCGTCCGTCCTCTA 575145 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || ||||||||||| | ||| ||||| | | || || ||||| || || | Sbjct 575144 GTTGCTTGCCAGCGAAGATAAGTCGCTGTTGGTCAGGAGGAATACCCTCCTTGTCCTGGA 575085 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||| | || | | |||| || ||| ||||| | || || ||||| | Sbjct 575084 TCTTCGACTTGACGTTGTCGATGGTGTCAGATGACTCGACTTCCAATGTGATGGTTTTTC 575025 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| ||||||| ||||| Sbjct 575024 CGGTAAGGGTCTTGACGAAGATTTGCAT 574997 >seq31 Length=4752496 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 || ||||||||||| |||| | ||||| ||||| || || || || |||||||| Sbjct 3795653 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCGAAGATC 3795594 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 || | ||| ||||||| | || || ||||| || || || || |||||| | || Sbjct 3795593 AGTCGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 3795534 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAA 152095 | | |||| || ||| || || || || || || |||||||| || ||||| ||||| Sbjct 3795533 ATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAA 3795475 >seq20 Length=4904830 Score = 89.7 bits (98), Expect = 1e-12 Identities = 185/273 (68%), Gaps = 2/273 (1%) Strand=Plus/Minus Query 115635 GCCATTTGGACATCTGATCTTTTTATGAAGCGAGTCAAGGCAAACGGAATGTGGAGCCTC 115694 ||| | |||| |||| ||||| |||||||| || || |||||| ||||| |||| Sbjct 1799669 GCCCTCTGGATCCCTGACCTTTTCATGAAGCGTGTTGAGAAGAACGGAGAGTGGACCCTC 1799610 Query 115695 TTTTGTCCCAATGAAGCCCCTGGTCTTGATGATGTTTATGGTCCAGAGTTTGAGAATCTT 115754 | || ||||| || ||||||||||| || || ||| |||||||||| || Sbjct 1799609 ATGTGCCCCAACGAGTGCCCTGGTCTTGCCGACTGCTACGGTGAAGAGTTTGAGGCCCTC 1799550 Query 115755 TACGAAAGGTACGAGAAAG-AGGGAAGAGCCAAAAGGGTTGTGAAGGCGCAAGACCTTTG 115813 ||||| | |||||||| | ||| ||| | | || | | ||||| || | ||||| Sbjct 1799549 TACGAGAAGTACGAGAGGGAAGGTAAGGGTCGCAA-GTCCATCAAGGCCCAGAAGCTTTG 1799491 Query 115814 GCATCATATCCTTGTCACACAGTCAGAGGTCGGAATGCCCTTTATTGCGTACAAAGATGC 115873 | || ||||| | | ||| | ||| ||||| ||||| || ||||| ||||| Sbjct 1799490 GTATGCCATCCTCGAGGCCCAGACCGAGACCGGAAACCCCTTCATGCTTTACAAGGATGC 1799431 Query 115874 AGTTTGTCGAAAGAGCAATCAAAAGAATTTCGG 115906 | || |||||||| || ||||| |||| Sbjct 1799430 CTGTAACCGCAAGAGCAACCAGAAGAACCTCGG 1799398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153819247750455