Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20azukicola_20[genbank_20GCA_5F001680625.1_202016-07-06] 32,428 sequences; 51,307,981 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq3807 159 1e-33 seq10759 129 2e-24 seq1209 87.8 5e-12 >seq3807 Length=4617 Score = 159 bits (176), Expect = 1e-33 Identities = 230/323 (71%), Gaps = 1/323 (0%) Strand=Plus/Minus Query 349610 GCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCT 349669 ||||| | ||||| || ||||| || || || ||||||| || || || ||||| Sbjct 2642 GCTGTCGTCACTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCC 2583 Query 349670 GGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATT 349729 || |||||| || | || ||||| |||| || || |||||||| ||||| || ||| Sbjct 2582 GGTCTCATTGCTGGCCTCAACGTTCTCCGAATCATCAACGAACCCACCGCTGCCGCCATT 2523 Query 349730 GCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGT 349789 || || || || || || | || ||| || || |||| || || ||| | ||| Sbjct 2522 GCCTACGGTCTCGACAAGAAGATTGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGT 2463 Query 349790 GGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCA 349849 ||||||||||| ||||| || || || || |||| ||||| || || || || || | Sbjct 2462 GGTGGTACTTTCGATGTTTCGCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCT 2403 Query 349850 ACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTT 349909 || || ||||| || ||||| ||||| || || || || || ||||||||| || ||| Sbjct 2402 ACCGCCGGTGACACTCATCTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTT 2343 Query 349910 GTTAAAGAATTTAAGCGTCAAGC 349932 ||||| || || || || ||||| Sbjct 2342 GTTAATGAGTTCAAACG-CAAGC 2321 >seq10759 Length=1737 Score = 129 bits (142), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | |||||||||||||| || ||||| || || || || || Sbjct 1117 TTACTGACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTA 1176 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || || || ||||| || || || ||||||||||| || || ||||| || Sbjct 1177 GTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 1236 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || |||||||| || | || || || ||||| | ||| | Sbjct 1237 AGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA 1296 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||||| || || || || ||||| |||||||| Sbjct 1297 CTCCACCTCTAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 1350 Score = 89.7 bits (98), Expect = 2e-12 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| || || ||||| ||||| || || || || || || Sbjct 1348 CATACCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 1407 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| || || || || || || || || || || || || ||||| ||||| Sbjct 1408 GCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGG 1467 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||| || || || | || || || || |||| || || | || Sbjct 1468 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTC 1527 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 1528 CACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGAC 1566 >seq1209 Length=9026 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||| || || || || || || Sbjct 5265 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 5324 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 5325 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 5384 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || | || || || || || | || || | || || Sbjct 5385 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 5444 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||||| || || || || || ||||| |||||||| Sbjct 5445 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 5492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514624836419684