Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4231 316 2e-81 seq3104 181 9e-41 seq1268 116 3e-21 seq2318 93.3 4e-14 seq5434 89.7 5e-13 >seq4231 Length=4255 Score = 316 bits (350), Expect = 2e-81 Identities = 643/951 (68%), Gaps = 8/951 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || ||||| ||||| || || ||||| || || |||||| | ||| ||||| || Sbjct 3358 GAAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAG 3299 Query 23087 AGATTG---CTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAA 23143 |||||| |||| || ||||||| || |||||||||| || || ||||| Sbjct 3298 AGATTGGAGCTACGG---ATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGG 3242 Query 23144 TCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCAC 23203 ||||||||||||||| | || |||| |||||| ||||| ||||| ||| || ||| Sbjct 3241 TCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAG 3182 Query 23204 ATAGTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAA 23262 | |||| || | | ||| || ||| ||| | | ||| ||||||| ||| | Sbjct 3181 AGCTTCTGGGCCTTCATG-GTCTTGCGACCCTTGCCCGCCTTCTCATACTTTTCGTAAAG 3123 Query 23263 CGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAG 23322 || || || || | || || ||||||||||| ||||| | | | ||||||||||| Sbjct 3122 AGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACATGAG 3063 Query 23323 ACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTA 23382 |||| || || || || || |||| || ||||| || ||||| ||||| Sbjct 3062 GGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAGCCAG 3003 Query 23383 GAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTC 23442 |||||| ||||||||||| |||||||| |||||| |||||| || || | || || Sbjct 3002 GAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGAACTC 2943 Query 23443 CAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCC 23502 || || || || ||||| ||||| ||||| | |||||| || || |||| ||| ||||| Sbjct 2942 AAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGTTGCC 2883 Query 23503 GCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTT 23562 ||||| |||||||| ||||| ||||||||| | || | ||||| || || |||||| Sbjct 2882 ACCCTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTT 2823 Query 23563 GGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAA 23622 ||| | ||| || || | || || | || || | ||| |||| | Sbjct 2822 GGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTTAG 2763 Query 23623 ACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCC 23682 || || || || || || || ||||| || || || ||||| || || || || Sbjct 2762 GCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACC 2703 Query 23683 CTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGT 23742 ||| |||||||||||||| | |||||| ||| || || |||| || | | ||| || Sbjct 2702 CTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGT 2643 Query 23743 AGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTA 23802 | | || ||| || || ||| ||| || || ||| || ||||||| || ||||| Sbjct 2642 ACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTA 2583 Query 23803 CGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | | | ||||| || || || || |||| | || ||||| ||||| Sbjct 2582 GGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACACGCATGATCAT 2523 Query 23863 GTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGT 23922 || || || | ||| || | ||| | ||| |||| || || || || | | || Sbjct 2522 GTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGATCGCTCAAGAGT 2463 Query 23923 TTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || ||||| || | || | |||||||| || | || |||||||| Sbjct 2462 CTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGACAATGGCCGA 2412 Score = 127 bits (140), Expect = 2e-24 Identities = 344/524 (66%), Gaps = 7/524 (1%) Strand=Plus/Minus Query 22145 GTGCGAAGATAATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGAC 22204 || || || || ||||||||||||||||| || | |||||| || ||| || || Sbjct 4240 GTTCGCAGGTAGTACATGCCCGTCTTCAGGCCGAGCTTCCAGCCGGCAAAGTGCATGCTG 4181 Query 22205 GTCAATTTTCCATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATA 22264 || | || || | || | ||||| | |||| ||||| |||||| || Sbjct 4180 GTGATCTTGCCCATGGTGGGGTCCTTCATGTGGATGTTGAGGGACTGGGACTGATCAATG 4121 Query 22265 AACGCTCCTCGATCGGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTC 22324 || || ||||| ||||| ||||| | | | ||| ||| || ||||| |||||| Sbjct 4120 AAGGCACCTCGGTCGGCAGCCATCTGAACGACCTGGCGCTGCGAAATCTCCCAGACGGTC 4061 Query 22325 TTGTACAGTTGCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTG 22384 ||||| || | ||| ||| || || ||| |||||| ||| ||||| | | Sbjct 4060 TTGTAGAGGGCCTTGACCTCGGCGGGGATGTTGGGGATGTTCTGGATGGAACCGTTCTCG 4001 Query 22385 TGTATGATCAAATTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACC 22444 ||||| ||||| || | ||| ||||| || ||| | | || |||| | Sbjct 4000 GCAATGATTCGGTTTTTCATGGCATCCGACCACAGGCCCATGTCAACAAGGTCCTTGAGC 3941 Query 22445 AGATGACGGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGAT 22504 || |||| || || || |||||||| | | ||| ||||| ||||| |||||||| Sbjct 3940 AGCCAGGGGTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAG 3881 Query 22505 GTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATC 22564 ||| | || ||||| | || ||||| ||||| ||||| | || || || ||||| Sbjct 3880 GTGTAAGGCTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATA 3821 Query 22565 GGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCT--TTGAAATTTTACTCTTGAGCATCG 22622 || || | ||| || ||| | | |||||||| |||| | | | |||| || Sbjct 3820 GGGGCAAGCAGCAGACTGTTGCGAATGCCGTGCTCCTTGACCTGCT--CCCTGAGGTTCT 3763 Query 22623 ACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATCG 22666 ||||||||| || || || ||| ||||||| |||||| ||| Sbjct 3762 CCCAGTCCCAGAGGTCAGAAGGCTTCACATT---CCACATGTCG 3722 >seq3104 Length=5293 Score = 181 bits (200), Expect = 9e-41 Identities = 556/847 (66%), Gaps = 31/847 (4%) Strand=Plus/Minus Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 ||| | || ||| | |||||||| ||||| || || || || ||||| | ||| || | Sbjct 1944 CCACAGATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATT 1885 Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAAT-CTGA-GAGAAATTTTA 57681 || || || |||||||| ||| ||| | || | || | | || ||| | || | Sbjct 1884 GATCTATCCAAGGATCTCCACGACTGGAACAACCGCCT-GACTGCCGACGAGCAGTTCTT 1826 Query 57682 --TTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT 57739 | ||| | | || || ||||| || || || || || || |||||||| | || Sbjct 1825 CGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGT 1766 Query 57740 CGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGT 57799 ||| |||| || || || | | ||||| ||||||| ||||| || || | Sbjct 1765 CGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGAT 1706 Query 57800 GGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGA 57859 || || ||| | || || || | || ||||| ||||| || || ||| | ||||| Sbjct 1705 CATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATTGACACCTACATCAAGGA 1646 Query 57860 CAACGA-CGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGA 57918 | | | ||| || || |||||||| || || || || ||| ||| ||||| Sbjct 1645 GCCTGCTCAACGAACCTAC-CTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGA 1587 Query 57919 AGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTC---GCCGAGAGGC 57975 |||| || ||| | ||| |||||| | | || | | ||| | || || | | Sbjct 1586 AGGCCGACTGGGCCATCCGATGGATCCAG---GACAAGAACTCGTCCTTTGCTCAGCGTC 1530 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTT 58035 | |||| || || |||||||| ||||| ||||| || |||||| | || || | Sbjct 1529 TCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCT 1470 Query 58036 GGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCG 58095 || | ||||| || ||||| ||||| |||||||| ||| ||||||| | || || || | Sbjct 1469 GGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTG 1410 Query 58096 ACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCG- 58154 |||||||||| || || || ||||| ||||| | |||| ||| |||| ||| Sbjct 1409 ACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCAC---CTCAA-GGGCCGT 1354 Query 58155 ------ACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAG 58208 | || || |||| |||||| |||||||| || ||| | || || | ||| Sbjct 1353 GCCAGCAAGCAGG---TCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAG 1297 Query 58209 TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAG 58268 || | ||||| ||||| || ||| ||||||| |||||| || | ||| || Sbjct 1296 TTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAG 1237 Query 58269 TACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGGAGAGCGTCATTACA 58326 ||||| ||||| || |||||| | || | ||| || | |||| ||| |||| Sbjct 1236 TACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTC--TACA 1179 Query 58327 ACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTT 58386 | | | || || || || || ||| | ||||| |||| |||||||| ||||| | Sbjct 1178 AGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCT 1119 Query 58387 TCGAAAA 58393 |||| || Sbjct 1118 TCGAGAA 1112 >seq1268 Length=8946 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || |||||| | || || ||| ||||| Sbjct 4765 ATGCAGATCTTCGTCAAGACCCTCACCGGAAAGACCATCACCCTTGAGGTGGAATCGTCC 4824 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| || || ||||||||||||| | || || || || Sbjct 4825 GACACCATTGACAATGTGAAATCGAAGATCCAGGACAAGGAAGGCATTCCTCCTGATCAA 4884 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || || ||||| ||| | || ||| ||| | ||||| || ||| Sbjct 4885 CAGCGACTCATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGAACTCTCAGCGACTACAAC 4944 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || |||||||| || ||||| ||| | ||| | || |||| Sbjct 4945 ATCCAGAAGGAGTCGACTCTGCACCTGGTTCTTCGTCTGCGCGGTGGTA 4993 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || ||||| | || || || || | Sbjct 4993 ATGCAGATCTTTGTCAAGACTCTCACTGGAAAGACCATCACTCTGGAGGTGGAGTCGAGC 5052 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || || | || ||||||||| ||| | || || |||||| Sbjct 5053 GATACCATTGACAACGTGAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCTGACCAG 5112 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || ||||| || ||| |||||||| | || || ||| || ||| Sbjct 5113 CAGCGACTTATCTTTGCTGGTAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAAC 5172 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || ||||| |||||||| || || | || | |||||| Sbjct 5173 ATCCAGAAGGAGTCGACCCTTCATCTTGTTCTCCGTCTCCGTGGCGGT 5220 >seq2318 Length=6151 Score = 93.3 bits (102), Expect = 4e-14 Identities = 166/242 (69%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || || || ||||| || || || || || |||||| |||| || || | Sbjct 702 AAGATGCAGATCTTTGTCAAGACCCTCACGGGGAAGACAATCACCCTCGAGGTGGAGTCT 761 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 762 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 821 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| | || || || ||||||| || Sbjct 822 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 881 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT----AGAAG 31425 ||||| || || || || || || ||||| || | ||| | || ||| ||||| Sbjct 882 AACATCCAGAAGGAGAGCACCCTCCACCTGGTCCTCCGCCTGCGTGGTGGTGCCAAGAAG 941 Query 31426 CG 31427 || Sbjct 942 CG 943 >seq5434 Length=2800 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 |||||| ||||| ||||| ||||| || |||||| |||| || || | || |||| | Sbjct 210 TTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCGGACACCAT 269 Query 31261 CGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCT 31320 || | ||||| | || ||||||||| ||| | || || ||||||||||| || Sbjct 270 TGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAGCGACT 329 Query 31321 AATATTCGCTGGCAAACAGTTGGAAGA 31347 || ||||||||||| ||| |||| || Sbjct 330 GATCTTCGCTGGCAAGCAGCTGGAGGA 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445642538233680