Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq3104 176 8e-39
seq1268 170 4e-37
seq1666 167 4e-36
seq2318 161 2e-34
seq7427 104 4e-17
>seq3104
Length=5293
Score = 176 bits (194), Expect = 8e-39
Identities = 562/864 (65%), Gaps = 21/864 (2%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|| ||| || ||||||||||| || || || |||||||||||||| |||||| |
Sbjct 1078 CAGGACACCAGCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACC 1137
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|||||| ||| |||||||||||| |||||||| ||| | ||| || ||
Sbjct 1138 GAGGGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCC 1197
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || || | |||||| || ||||||||||||||||| |||| ||||| | |||
Sbjct 1198 GAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTT 1257
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | || | |||||||| ||| ||| | ||| |||| || ||| ||| ||
Sbjct 1258 CATGCCGAGCAGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGC 1317
Query 10175 TTCCTCGACGATGCTCT---TTACC-ACGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
|| || |||| || | ||| | | || || || || ||| | || |
Sbjct 1318 ATCGGTGATGATGTCCTGGATGACCTGCTTGCTGGCACGGC----CCTTGAGGTGGGAGT 1373
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
||||| | |||| | ||| || |||||||| || ||||| ||||||||| |
Sbjct 1374 GGAGGAGGCATGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAA 1433
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350
| ||| || |||||||| || || || |||||||| |||| | || | |||
Sbjct 1434 AGGTCAGGCCAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGC 1493
Query 10351 AGAACAGAAGACCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAGGA-GCGGTC- 10408
||| | | |||||| ||| | |||||||||| |||| || ||||| | | ||
Sbjct 1494 TGAAGAAGATACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCT 1553
Query 10409 -GCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGA 10467
| | | || |||||| | |||||||| | | | ||||| ||||| |
Sbjct 1554 TGTCCTGGATCCATCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAA 1613
Query 10468 TAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGG 10527
| || | |||||| | | | || | | |||| || | |||| ||| || |
Sbjct 1614 TGGCGTTGAAGAGGTAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCG 1673
Query 10528 AGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATACGTGCC 10586
|||| |||| ||||| | |||| | |||| | ||||||| ||| || |||
Sbjct 1674 AGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAT-CGGGCC 1732
Query 10587 GAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCG 10646
|||| | ||| || || || | | |||||||| | || ||||| ||
Sbjct 1733 TCGGGGATCTGGACCTCGCCGCTGAATCGCTCGACAAGGTTCTCGTTGACGATGCCGTCA 1792
Query 10647 CTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTCA----G 10702
| | || |||||| |||||||||| || |||| |||| || | ||| |
Sbjct 1793 GAGGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGG 1852
Query 10703 TTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAAAGT 10762
|| || |||||| | ||||| | || | | |||||| | ||||||||||
Sbjct 1853 TTGTT----CCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAAGA 1908
Query 10763 GGCAACGGCCTTCTTGTACATCTG 10786
||| |||||||||||||||||||
Sbjct 1909 GGCCTCGGCCTTCTTGTACATCTG 1932
>seq1268
Length=8946
Score = 170 bits (188), Expect = 4e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | |||| ||| || || ||||| || |||||||| || ||| |
Sbjct 4991 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 4932
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| ||||| || ||||||| ||||| || || |||
Sbjct 4931 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 4872
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || ||||| | || || || |||||||| | ||||| ||
Sbjct 4871 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTCCACC 4812
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct 4811 TCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4765
Score = 145 bits (160), Expect = 1e-29
Identities = 154/203 (76%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || |||||||| | || | ||| || || ||||| || |||||||| |||||||||
Sbjct 4488 CCACCACGAAGGCGGAGGACGAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCGGAG 4429
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || |||||||| ||
Sbjct 4428 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCGGGGGGG 4369
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| | |||||| |||||||| || | || || ||
Sbjct 4368 ATGCCCTCCTTGTCCTGAATCTTCGACTTGACATTGTCGATGGTATCCGAGGACTCGACC 4309
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|| | ||| ||||| || |||||
Sbjct 4308 TCGAGGGTAATGGTCTTGCCCGT 4286
Score = 145 bits (160), Expect = 1e-29
Identities = 164/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | || | ||| || || ||||| || || ||||| || |||| |
Sbjct 4763 CCACCACGGAGGCGGAGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTCGGCG 4704
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || || | || ||||| || |||
Sbjct 4703 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGGAGGA 4644
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||| ||||| ||||| | ||||||| ||||| ||||| | || || ||
Sbjct 4643 ATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTCCACC 4584
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATA 68454
|| | |||||| || || || |||||||||||||||| ||
Sbjct 4583 TCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGACGACTA 4544
>seq1666
Length=7987
Score = 167 bits (184), Expect = 4e-36
Identities = 673/1038 (65%), Gaps = 44/1038 (4%)
Strand=Plus/Minus
Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040
|||||||||||||||| | ||||||| ||||||||||||| || || || ||||||
Sbjct 3166 CGCCACTGGATGTACTCGGAGGGGGTCTTGTCCAGGTGGTTATCGATGTGAGCGAAAGCG 3107
Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACA-CAGAGCCCCGAGTCGG 225099
||||| | ||| || || || ||||| |||| | | | | || || ||
Sbjct 3106 TGCTGCTTGATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTCGGTGGGG 3047
Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159
|| | ||| || |||||||| |||||||| || | |||||| ||||| ||||| || ||
Sbjct 3046 ATGAG-CTCACCAGTGAGGACGTTGATGAGGGTGGACTTGCCGGCACCGTTGGGACCGAT 2988
Query 225160 CACGCCAATCCGGGATGACATTGCAACCTG---CGAGTTCACGTTG--CTGAAGATCTCA 225214
||| |||| ||||| || | ||| ||| | || || |||| | | |
Sbjct 2987 GACGGCAATACGGGAGCCCAGGGAGCACTGGAAGGAGATGTCGGTGATCTGAGGCTTGGA 2928
Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGGTCC 225268
|| | | |||| |||| || | ||||||| |||||| | ||
Sbjct 2927 GGTACCG--GGGTACTGGAAGGACATCTTGGTGGCACGCAG------GATGGCCTTGGCC 2876
Query 225269 TTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCGTCC 225328
|||| | | |||||| ||||| |||||||| ||||| ||| | || | | | |
Sbjct 2875 TTGGTCTTGACACCCTCGAGGAAACCGGGCTCAGGGAAGGAGAACTCGATCTCGGAGGCA 2816
Query 225329 TTCAGGTCGTAGTAAGAT---GCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTTT 225385
|| |||||||||||| |||| ||| ||| || |||||||||| ||||||
Sbjct 2815 CCGAGCTCGTAGTAAGATCGGGCAG--AGGGGACGCGCTG-GACGAAAGCAGCCAGGTTA 2759
Query 225386 CCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACACTGC 225444
|| || | ||||||||| | |||||| || ||||| ||| | ||| ||
Sbjct 2758 CCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACAATGTGCTG-GCAGACGTT 2703
Query 225445 GTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCTTGA 225503
||| |||||||||||||||||||| || |||||||| | || | | | | |||
Sbjct 2702 GTCGAGGAAGCCAGAGTCGTGGGAGACGATGATGGAGGTGCAAG---GAGA-GTTGGTGA 2647
Query 225504 GGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAA 225563
||| | |||||| ||||| | || || | ||||| ||||| ||||| || |
Sbjct 2646 GGTACTCCTCGAGCCACTTGACGTTCTTCACATCTAGATGGTTGGTAGGCTCGTCTAGCA 2587
Query 225564 GCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCC 225623
|||| || || | | | || || ||| || |||| |||||||| ||||| || |
Sbjct 2586 GCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAACCAC 2527
Query 225624 CGGACAGGGAGCCGATTGAAACAGAGTGC-TTAGCTTCGTCAAAGCCGTACTCCAGGAGC 225682
|||| |||| ||| |||| | || || ||| |||||| | || ||||
Sbjct 2526 CGGAGAGGGCAGTGATCTCGCCAGAAACCATTTGC-TCGGTGAAGCCGAAGTCGTTGAGC 2468
Query 225683 GTCTGGA--TAATGCGCTCGGGAG-AGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739
|| || || | | ||||| | || | |||| || | | | | |
Sbjct 2467 TGCTTGACGACATCCTCCTGGGAGTTGGTGACACCGGCCTCGGCGAGCTTCTTCATGGTC 2408
Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799
| ||| |||||| || | | ||| | ||| | |||||| || ||| | || |||
Sbjct 2407 CAGTCAATGGTGGTCATCTCAGTGTCAGCAGAGTCCAGGTCGTGCTCGACGAAGACGGTC 2348
Query 225800 CGGAGCT-GAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAG 225858
|| || | || | |||||| ||||| | ||| | || || ||||| | ||
Sbjct 2347 TTGACCTCGCTCTGC-TTGGGGAAACCCTCAACCTGCTCGTTGTTGATGGCACGCATGAG 2289
Query 225859 GGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTT 225918
|| |||||| | |||||||||||| || ||||| | | || ||||||| |
Sbjct 2288 AGTGGACTTGCCGGAACCGTTGGGACCGCAAAGACCGTAGCGCTGGCCACGCTTGAGGCG 2229
Query 225919 GAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978
|||| | || ||| || || |||||| |||| |||||||| ||||| || | |||
Sbjct 2228 GAGGTGAGTCTGGTTGAGCAGAATCTTGGCACCGTAGGCAAGAGAGAAAGTACAGTTGCA 2169
Query 225979 CAGGTCCTCACCCTCCTC 225996
|| ||||||||||||||
Sbjct 2168 AAGATCCTCACCCTCCTC 2151
>seq2318
Length=6151
Score = 161 bits (178), Expect = 2e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || ||||| | |||| ||| || ||| ||| || |||||||| || |||
Sbjct 931 CCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 872
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| || || || ||||||| || |||||||| ||
Sbjct 871 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGGG 812
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| | ||||||| ||||||||||| | || || ||
Sbjct 811 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 752
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||| || || ||||||||||||||||| || ||||||||
Sbjct 751 TCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 705
>seq7427
Length=2505
Score = 104 bits (114), Expect = 4e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| | |||||||||||||||| | || || || |||| | || | | |
Sbjct 574 TAACGCCACTGAAGGTACTGGTTGGGGGTCTTCTCGAGATGCATCTCGACGTGCTCCAGA 633
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097
|| ||||| | ||| | || |||| |||||| |||||| || || |||
Sbjct 634 GCGTGCTGCTTGATGTAGCCGATACGCAAGTTGGGGTGCTTCTCGACCTTTCCGGTAGTA 693
Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157
|| | |||||||||||| | |||||| || |||| |||||| || || |||||||||
Sbjct 694 GGAATGGTCTCGCCGGTGAGCAACTTGATCAGGGTAGACTTGCCAGCTCCGTTGGGGCCA 753
Query 225158 ATCACGCCAATCCGGGATGACATTG 225182
|| | | ||| ||||| |||| ||
Sbjct 754 ATGATGGCAACACGGGACGACAGTG 778
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921366315695880
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