Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2318 131 2e-25 seq1268 125 8e-24 seq5434 93.3 5e-14 >seq2318 Length=6151 Score = 131 bits (144), Expect = 2e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 42012 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 42071 ||||||||||| || || ||||| || ||| || || | || || |||||||| ||| Sbjct 901 GTGCTCTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCA 842 Query 42072 GCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 42131 || || ||||||||||||||||||| || | || |||||||||| ||| || ||| Sbjct 841 GCAAAGATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTG 782 Query 42132 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 42190 | ||| | | | |||||| || ||||| |||| ||||| || || ||||| || || Sbjct 781 A-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGT 723 Query 42191 CTTTACAAAGATTTGCATTTT 42211 ||| |||||||| ||||| || Sbjct 722 CTTGACAAAGATCTGCATCTT 702 >seq1268 Length=8946 Score = 125 bits (138), Expect = 8e-24 Identities = 145/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | ||| || || |||| || |||||||||||||| || Sbjct 5184 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAA 5125 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || |||||||||||||| | || | || |||||||||| ||| | || | | ||| Sbjct 5124 GATAAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC-TGAATCTTGGACTTCACGT 5066 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || |||||||| ||||| || | |||||||| || || || || ||||| | Sbjct 5065 TGTCAATGGTATCGCTCGACTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGA 5006 Query 42196 CAAAGATTTGCAT 42208 ||||||| ||||| Sbjct 5005 CAAAGATCTGCAT 4993 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || |||| || |||||||| || || || Sbjct 4956 CTCCTTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAA 4897 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||||||||| || || | || | || ||||||||| ||| || ||| | | Sbjct 4896 GATGAGTCGCTGTTGATCAGGAGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATT 4837 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | |||||| ||||||||| || | |||||||| || || || || ||||| || Sbjct 4836 GTCAATGGTGTCGGACGATTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGAC 4777 Query 42197 AAAGATTTGCAT 42208 ||||| ||||| Sbjct 4776 GAAGATCTGCAT 4765 Score = 86.0 bits (94), Expect = 7e-12 Identities = 129/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||| || || || || || | || || |||||||| || ||||| Sbjct 4728 CTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAA 4669 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||| || ||| || |||| ||| Sbjct 4668 AATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA-CGT 4610 Query 42137 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | ||||||| || ||||| |||| ||||| || || || || || ||||| | Sbjct 4609 TGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGA 4550 Query 42196 C 42196 | Sbjct 4549 C 4549 >seq5434 Length=2800 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 42019 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 42078 |||| || || ||||| || | || || || | || || |||||||| |||||||| | Sbjct 391 CCTTCTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCCAGCTGCTTGCCAGCGAAGA 332 Query 42079 TGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 42138 | |||||||||||||| | || | || |||||||||| ||| || |||| | Sbjct 331 TCAGTCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 272 Query 42139 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 42198 | | ||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 271 CAATGGTGTCCGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGA 212 Query 42199 A 42199 | Sbjct 211 A 211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543061861533360