Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq1268 125 7e-24
seq3104 111 2e-19
seq2318 104 2e-17
>seq1268
Length=8946
Score = 125 bits (138), Expect = 7e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || |||| ||| | ||| | || | | |||||||| || ||||||||||||||
Sbjct 4991 CCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTG 4932
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||| || || |||| | |||| || |||||||| || |||||
Sbjct 4931 AGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGGAGGA 4872
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| || ||| | |||| || | |||||||| ||| |||||
Sbjct 4871 ATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTG-TCAATGGTGTCGGACGATTCCAC 4813
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || || || || || || ||||||||
Sbjct 4812 CTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4765
Score = 114 bits (126), Expect = 1e-20
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
||||| || | ||| | ||| | ||| | | | |||||||| || |||||||||||| |
Sbjct 5219 CCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5160
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||| || || || ||||| | | |||| || ||||| ||||| || ||
Sbjct 5159 AGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTCAGGGGGG 5100
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| | || | || | ||| || | ||| ||| |||||||||
Sbjct 5099 ATGCCCTCCTTGTC-CTGAATCTTGGACTTCACGTTG-TCAATGGTATCGCTCGACTCCA 5042
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| | || | || || ||||| ||||| || ||||| ||||||||
Sbjct 5041 CCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 4993
Score = 84.2 bits (92), Expect = 2e-11
Identities = 129/184 (70%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| ||||||||||||||| | || || ||||| || || || ||||
Sbjct 4732 TTGACTCCTTCTGAATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGG 4673
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| || || ||||| ||||| ||||| ||||| || || || ||| || || |
Sbjct 4672 CGAAAATCAGGCGCTGCTGGTCAGGAGGAATACCCTCCTTATCTTGGATCTTCGACTTGA 4613
Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
| || | ||||||| ||||||||||||| || | || |||||||| || || |
Sbjct 4612 CGTTGTCGATCGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCT 4553
Query 138599 TTAC 138602
| ||
Sbjct 4552 TGAC 4549
>seq3104
Length=5293
Score = 111 bits (122), Expect = 2e-19
Identities = 338/517 (65%), Gaps = 19/517 (4%)
Strand=Plus/Minus
Query 52329 CCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACG 52388
|| ||| | ||||| ||||| | ||||| || |||||| || | | | | | |
Sbjct 1602 CCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCC 1543
Query 52389 CTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTT 52448
| || |||| | || ||||| || |||||||| | || || ||| ||||
Sbjct 1542 TTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTT 1483
Query 52449 GCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAG 52508
||| ||||||| | | || | | ||| | ||||| |||||||| || |||||||
Sbjct 1482 GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAG 1423
Query 52509 TTGATATCGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCTCT---ACTACAAG--- 52562
| || || || ||||| || || ||||| |||||||| |||||| ||| | |
Sbjct 1422 CTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCCCACCTC 1363
Query 52563 -ACGCGCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGT 52621
| | |||| | | || | | || || ||| | ||| ||| || || ||
Sbjct 1362 AAGGGCCGTGCCAGCAA----GCA---GGTCA---TCCAGGACATCATCACCGATGCCGT 1313
Query 52622 GGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGC 52681
| || || ||||||| | || | || || || || ||||| |||||||||||
Sbjct 1312 CACCATTGAGCAGGAGTTCCTGACCGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGC 1253
Query 52682 GCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCA 52741
| |||| ||||||||||||| || || || || || | || ||||| ||
Sbjct 1252 CGACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGG-CA 1194
Query 52742 GCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGG 52800
| | ||| || ||| || ||| || || || || ||| | ||||| || || | |
Sbjct 1193 ACGAGAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTG 1134
Query 52801 GCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
||||||||||||| ||||||||||| ||||| || ||
Sbjct 1133 GCAAGACCAACTTCTTCGAGAAGCGTGTCGGTGACTA 1097
>seq2318
Length=6151
Score = 104 bits (114), Expect = 2e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482
|||||| || |||||||||||||||| || || |||||||| || || || | | |
Sbjct 896 CTCCTTCTGGATGTTGTAGTCGCTCAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 837
Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG 138542
||| || ||||| ||||| || || || || || ||||| ||| || || | |
Sbjct 836 GATGAGTCGCTGCTGGTCGGGGGGGATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTT 777
Query 138543 TTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAC 138602
|| | |||||||| ||||||||||||| || | || || || || || || || ||
Sbjct 776 GTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGAC 717
Query 138603 AAAAATCTGCAT 138614
||| ||||||||
Sbjct 716 AAAGATCTGCAT 705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496124507288880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |