Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3104 134 2e-26 >seq3104 Length=5293 Score = 134 bits (148), Expect = 2e-26 Identities = 529/820 (65%), Gaps = 29/820 (4%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| ||||||||||||||||| ||||| ||| ||||| ||| |||||||| Sbjct 1096 GTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCAT 1155 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| || | |||| Sbjct 1156 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCGAGGGCGACGAGG 1210 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 || || || | |||| |||| ||||||| ||| || | |||||| |||| ||| Sbjct 1211 AGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGG 1270 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 || ||||| || || | |||| ||| ||||||| || || || | |||| Sbjct 1271 GCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATG 1330 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | || | | ||| | | | || ||| || ||| Sbjct 1331 TCCTGGATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CAT-GCA 1387 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || || ||| ||| || ||| Sbjct 1388 AAGTCGGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGC 1447 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 ||||| || |||||||| | |||||| || | ||| | || ||||||||| ||| Sbjct 1448 ATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCC 1507 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGT-ATCAAACCA 127701 || || || || || | ||||||| |||||||| || | |||| | | ||| Sbjct 1508 TCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGA-CGAGTTCTTGTCCTGGATCCA 1566 Query 127702 CTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAG 127761 || ||||| | ||||| || ||| || |||| ||||| || || | ||||| Sbjct 1567 TCGGATGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAG 1626 Query 127762 TTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCC 127821 | | || | || || |||||||| | || ||||| || || || ||| Sbjct 1627 GTAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGA 1686 Query 127822 GTGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTA 127880 ||||| | | ||| || | ||| | ||||||| | || || ||| ||||| | Sbjct 1687 GTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGA 1745 Query 127881 CCTCATCGGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAA 127937 |||| | || ||| | | || | ||||| || || || || || |||| | Sbjct 1746 CCTC-GCCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGA 1802 Query 127938 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGT 127994 | || || ||||| | | ||| ||| || | | ||| || | ||||||| Sbjct 1803 AGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGT 1862 Query 127995 CGTCGAGATCCTTTGAGAGATCTACCTCCTCCGCAGTCCA 128034 ||| ||||||||| || ||||| | |||||| |||||||| Sbjct 1863 CGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCA 1902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613336729355640