Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq4231 266 6e-66 seq3104 203 6e-47 >seq4231 Length=4255 Score = 266 bits (294), Expect = 6e-66 Identities = 845/1281 (66%), Gaps = 53/1281 (4%) Strand=Plus/Minus Query 221417 GTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCGGG 221475 || |||||||| |||||||| ||||| |||||| ||||||||| ||| | |||||||| Sbjct 3640 GTGAGGGCAGCATGGTAGATAGTCTCGAAGATCTGCTTGTTGAG-CTCACGAGCCTCGGG 3582 Query 221476 AGAAGTGAAGGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGATA 221533 ||| ||| ||||| ||||| | | ||||| | || || || ||||| || || | | Sbjct 3581 AGACTCGAAAGGCATGCGCAG-AGCAAGGAAAG-CATCAGCAAGACCCTGGACACCAACA 3524 Query 221534 CCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGA 221591 || ||||| | ||||| | ||||| | ||| ||||| | || || || ||| | Sbjct 3523 CCAATGGGTCGGTGTCGCATGTTGCTGTTGCGA--GCTTCCGTAACAGGGTAGTGGTTCA 3466 Query 221592 CGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGT 221651 ||||||| | |||| ||||| || || || | || ||| || ||||||| Sbjct 3465 CGTCGATAATCCTGTTCAGGTTGCGAACGACAACCTGTGTGACGTCGTGCAACTTCTGGA 3406 Query 221652 GATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGC 221711 | | | ||| | | |||| || | | || || || ||||| | Sbjct 3405 AGTC--ATAGCAAG----CATCATCGT--AGTTGATGAACGAAGGC----AGGGCCAGAG 3358 Query 221712 TGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGA 221771 || ||||| || || || ||||| || | | |||| || ||||| || |||| Sbjct 3357 AAGCAAGGTTGCAGACAGCAACCTCATCAGGGGCGCAGTACTCGATAATCTCGGTGCAGA 3298 Query 221772 GGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG-TCC 221830 | ||| || |||||| ||||||| || || || |||||| ||| ||| | ||| Sbjct 3297 GATTGGAGCTACGGATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGGTCC 3239 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| ||||| ||| ||||| ||| ||| | || || | |||||| Sbjct 3238 TTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCCTCGAGGATGGCATACCAGAGC 3179 Query 221891 TCTCTGGCGCTCACCGTCCTCTTGACTGCACCCTCG---GTCTTTTCATACCCG--GTAT 221945 | ||||| || | | ||||| ||||| | | ||| |||||| ||| Sbjct 3178 T-TCTGGGCCTT--CATGGTCTTGCG---ACCCTTGCCCGCCTTCTCATACTTTTCGTAA 3125 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACA 222005 ||||| | | |||| || || || ||| |||| || || ||| | |||||||| Sbjct 3124 AGAGCCT--CGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCACTCGTTGGGACACA 3067 Query 222006 TCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCG 222065 | || |||||| ||| | | ||| | || ||||||||| || || ||||| || | Sbjct 3066 TGAGGGTCCAGTCACCGTTCTTCTCGACACGCTTCATGAAGAGATCGGGAATCCAGAGAG 3007 Query 222066 CCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAA 222125 || | || || || | || || ||||||| ||||| ||| || | ||| || | | Sbjct 3006 CCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGCAGGTCAAGGA 2947 Query 222126 ACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGT 222185 ||||||| | || |||||||| ||||| || |||| ||| | || || |||||||||| Sbjct 2946 ACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAGGCACCAGGTCGCTTGT 2887 Query 222186 TGCCACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 |||||||||| || | | | | ||| | |||||||| ||||| | || | Sbjct 2886 TGCCACCCTGGTCGA-CGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACA 2828 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCA 222304 |||||||| ||||||||| || ||||| | || ||| | || | | || Sbjct 2827 CCGTTGGAGGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCAC---GGATTC-GGTG 2772 Query 222305 GAC----ATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTC 222360 ||| | |||||||||||| || || ||||||||||| ||| |||||||||| || Sbjct 2771 GACGTTTAGGCCGATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATC 2712 Query 222361 CATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGA 222420 || ||||| || |||||| || | || | ||| || || || |||| ||||| Sbjct 2711 ATAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGG 2652 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | || | || || || || || ||||| ||| || || ||| | || ||||| Sbjct 2651 CTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACAT 2592 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCATC 222539 ||| | ||| ||||| | ||| | | || | ||| ||| || | | | | || | Sbjct 2591 CAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCCCAGATGCCGACAGACACA-C 2533 Query 222540 TCATGTACATGTACTGGGGCCTCTCCACAGGACCCTTGGAGC--TGGAGAGCAGGTACGA 222597 |||| ||||| |||||| | ||| ||| | | | | | | ||| ||||| || Sbjct 2532 GCATGATCATGTGCTGGGGACGCTCAACA--ATCTTGCCATCAATCTTGAGGAGGTAGGA 2475 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGTGAACCACGGC 222657 | || ||||||||||| |||||||| | | | ||||| | | | | || | ||| Sbjct 2474 TCGCTCAAGAGTCTTGAAGCCAAAGTACTGGTATTGGAAGTCACGGTCATAGACAATGGC 2415 Query 222658 GGCGTCCAGCTCCGACTTGTG 222678 | ||| |||||| |||||| Sbjct 2414 CGAGTCTAGCTCCTCCTTGTG 2394 Score = 104 bits (114), Expect = 4e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| || || | ||| || | | |||||| | ||| || ||| | || Sbjct 3932 GTTGACGACCTGGAACTCGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGG 3873 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| || ||||||||||||||||||||| | || ||||| || ||||| || || | Sbjct 3872 CTCGAAGCACTCGTTGTTGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAG 3813 Query 221236 CAGCAGACTGTTGCG 221250 ||||||||||||||| Sbjct 3812 CAGCAGACTGTTGCG 3798 >seq3104 Length=5293 Score = 203 bits (224), Expect = 6e-47 Identities = 560/857 (65%), Gaps = 24/857 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | ||| |||||| ||||| ||||||||||| Sbjct 1938 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATTGATCTA 1879 Query 25537 GCCAAGGACATGGACGGCTGGTAC----GCTCTATCCAAAGACGAGCAGCATTTTCTCAA 25592 ||||||| | ||| |||| || || || | ||||||||| || || Sbjct 1878 TCCAAGGATCTCCACGACTGGAACAACCGC-CTGACTGCCGACGAGCAGTTCTTCGTCTC 1820 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | | || ||||| || |||||||| || || || |||||||| || |||| | Sbjct 1819 CCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAACGAGAACCTTGTCGAGCG 1760 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 ||||| | | || || ||| | |||||| || |||||||| |||||||| || Sbjct 1759 ATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGAT 1700 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGT 25769 || || | ||||| ||| || | ||| || || || ||||| | || Sbjct 1699 GGAGAACATCCACTCCGAGACCTACTC---GCTCCTCATTGACACCTACATCAAGGAGCC 1643 Query 25770 CGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGC 25829 || | || || || ||||| ||| ||| ||| ||||| | |||||| Sbjct 1642 TGCTCAACGAACCTACCTCTTCAACGCCATTGAGACCATCCCCTGCATCCGCAAGAAGGC 1583 Query 25830 GCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||||| |||||| | | ||| | | | |||| |||| || || || Sbjct 1582 CGACTGGGCCATCCGATGGATCCAGGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTCGC 1523 Query 25890 CTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAA 25949 ||||||||| || ||||| ||||| ||||||||| | ||||| |||||||||||||||| Sbjct 1522 CTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAA 1463 Query 25950 GCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGG 26009 | || || |||||| || ||| ||||||||||||||||||| | |||||||| Sbjct 1462 GAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGG 1403 Query 26010 TCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTC--T 26067 ||| |||| || ||||| ||||| ||| || | |||| ||| | | | | Sbjct 1402 TCTTCACACCGACTTTGCATGCCTCCTCCACTC---CCAC---CTCAAGGGCCGTGCCAG 1349 Query 26068 CAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNN 26126 |||| || | || | ||||||| || || || || ||| ||||||| | Sbjct 1348 CAAGCAGGTCATCCAGGACATCATCACCGATGCCGTCACCATTGAGCAGGAGTTCCTGAC 1289 Query 26127 NNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGA 26186 | ||||||||| | ||||||| || ||||| || Sbjct 1288 CGAGGCCCTCCCCTGCGCCCTGCTCGGCATGAACGCCGACCTCATGAAGCAGTACATCGA 1229 Query 26187 GTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACTCTACAGTACGCCT 26244 || || ||||||| || || || ||| || || || | |||||| | | Sbjct 1228 GTTCGTCGCCGACCGCCTCCTCGTCGCC--CTCGGCAACGAGAAGGTCTACAAGGCCACC 1171 Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 ||||| |||||||| ||||| ||||| || | | || |||||||||||||| || ||| Sbjct 1170 AACCCCTTCGACTTCATGGAGAACATCTCCCTCGGTGGCAAGACCAACTTCTTCGAGAAG 1111 Query 26305 AGGGTCGGCGACTATCA 26321 | ||||| ||||| || Sbjct 1110 CGTGTCGGTGACTACCA 1094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928586708861760