Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq3104 141 3e-28
seq3448 132 1e-25
seq4231 122 3e-22
seq2118 87.8 5e-12
>seq3104
Length=5293
Score = 141 bits (156), Expect = 3e-28
Identities = 247/354 (70%), Gaps = 4/354 (1%)
Strand=Plus/Minus
Query 133305 CCGAAGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT 133364
|||| ||||| ||| || || | ||||| |||||| || ||||| || || |
Sbjct 1736 CCGAGGCCCGATGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCT 1677
Query 133365 ATTCTACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAAC-TATTCAAC 133423
| || || ||||| || |||||||| || | | || | | || || | ||||||
Sbjct 1676 ACTCGCTCCTCATTGACACCTACATCAAGGAGCCTGCTCA-ACGAACCTACCTCTTCAAC 1618
Query 133424 GCCATTAGCGAATTTCCT-TGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA 133482
|||||| | || ||| || || ||||| | |||||||| || |||||||||
Sbjct 1617 GCCATT-GAGACCATCCCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCA 1559
Query 133483 GGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttt 133542
||||||| || |||||| |||||||| || ||||||| || ||||| || ||
Sbjct 1558 GGACAAGAACTCGTCCTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTT 1499
Query 133543 tttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACT 133602
||||| ||||| || ||| || || ||||| || |||||||| | | ||||| ||
Sbjct 1498 CTTCAGCGGTGCCTTTGCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCT 1439
Query 133603 GTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC 133656
| ||||| ||||| || || || | ||||||| ||||||||||| |||||
Sbjct 1438 GACCTTTTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGC 1385
>seq3448
Length=5504
Score = 132 bits (146), Expect = 1e-25
Identities = 193/273 (71%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 302571 GTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGC 302630
|||||| | | ||||| | || |||||||| ||||| || | || || || ||
Sbjct 2358 GTCTTCAAGAGCCTTGACCAGTCGTCGCTGAATGTAACCCGTCTCGGCGGTCTTGACCGC 2417
Query 302631 TGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAG 302690
|||||||| ||||| | |||||| |||| || |||||||| | ||| || ||
Sbjct 2418 GGTATCAATGAGACCTTCTCGACCAGCCATGGCGTGGAAGAAGAACTCGGAAGGAGTGAG 2477
Query 302691 CCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGT 302750
|| | || | | ||| |||| ||||||||||| || |||||||| | ||| ||||||
Sbjct 2478 ACCACGAAGATACGAGTTCTCGACGAAACCACGGGCTTCGGGCGAGTAATCGTCCTTGGT 2537
Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810
|| || ||||| || | || || | ||| | || |||||||| || || ||| ||||
Sbjct 2538 GAAATGAGGCAGCGTGCGGTACTTGAATCCGAAGGGAATACGCTTGCCTTCGACGATCTG 2597
Query 302811 CTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843
|||||| | | | ||||||||||||| ||
Sbjct 2598 CTGTCCGACAAGGGCAGTCATCTGCGAAATGTT 2630
>seq4231
Length=4255
Score = 122 bits (134), Expect = 3e-22
Identities = 565/885 (64%), Gaps = 19/885 (2%)
Strand=Plus/Minus
Query 155626 CGCTGTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCT 155685
||| ||| || | |||||| ||| || || || || ||||||||| | |||||||
Sbjct 3324 CGCAGTACTCGATAATCTCGGTGCAGAGATTGGAGCTACGGATGGTGCCCAGGTTCTTCT 3265
Query 155686 GGTTAGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCT 155745
|||| || | ||| || |||||||| || ||| | ||| | || ||||| |||
Sbjct 3264 GGTTGCTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCT 3205
Query 155746 GTGCGTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTT 155805
| || || || || |||||| | |||| || || |||| ||||
Sbjct 3204 GCGCCTCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCG 3145
Query 155806 CCGACTCATA--TTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCC 155863
|| |||||| |||| || | ||| | | | ||||| || || || || ||| ||
Sbjct 3144 CCTTCTCATACTTTTCGTAAAGAGCCTC--GAACTCCTCGCCATAGCAGTCGGCCAGACC 3087
Query 155864 AGGGCACTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCAT 155920
||||||| | ||| || | || | ||| | || || ||| |||||| |||
Sbjct 3086 GGGGCACTCGTTGGGACACATGAGGGTCCAGTCACCGTTCTTCTCGA---CACGCTTCAT 3030
Query 155921 AAATACATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCC 155980
|| | ||| ||| | ||| ||| ||||| | || |||||| | |||
Sbjct 3029 GAAGAGATCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCC 2970
Query 155981 GTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACAT 156040
||| ||||| || || || | ||| || | ||| | || ||||| || || ||
Sbjct 2969 GTGGTTCTTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGAT 2910
Query 156041 AGCAAAACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAA 156097
||||| |||| | |||| |||||||| || || ||||| ||||| || |||||
Sbjct 2909 GGCAAAGGCACCAGGTCGCTTGTTGCCACCCTGGTCGACGTACCGGGCAGTGTTGTTGAA 2850
Query 156098 GACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GCGAATATGCGAAC 156156
||||| ||||| || | | ||| ||||| || || ||||| || ||| || | || |
Sbjct 2849 GACACGAAGCATGGGGGTGACACCGTTGGAGGTACCGTTGGTACCAGCG-ATGTAAGAGC 2791
Query 156157 CAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGA 156215
||| | || | || | | ||| || |||||||| | |||| || || ||
Sbjct 2790 CAGTGGCACGGATTCGGTGGACGTTTAGGCCGATACCACCCG-CCATCTTGGAGATCATG 2732
Query 156216 GCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGA 156275
|| || ||| | ||||| ||||||| ||||| || |||| ||| | ||
Sbjct 2731 GCACAGGTCTTGAGAGTATCATAAATACCCTCAATGCTGTCCTCTTTCATGTCGACCAGG 2672
Query 156276 TAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGA 156335
|||| || | ||||| | || || ||||| ||||| || || || | |||||
Sbjct 2671 AAGCATGAGGACAGCTGAGGCTGGGGAGTACCAGCATTGAAGAGGGTGGGGGAGGCATGG 2612
Query 156336 ATAAAATACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAAGAT-TAGACCC 156394
| || | || | ||||| | ||| |||||| | ||||| || ||||
Sbjct 2611 GTGAAGAATTTGCTCGACATCAGGTTGTAGGTCTCCAGGACACGCTCAATATCGTCACCC 2552
Query 156395 GTGAATACAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATC 156454
| || | || ||| || | ||| ||| ||||| |||||||| |||||| |||||
Sbjct 2551 CAG-ATGCCGACAGACACACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATC 2493
Query 156455 AATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499
||| || ||||| | || || ||||| || || || || ||
Sbjct 2492 AATCTTGAGGAGGTAGGATCGCTCAAGAGTCTTGAAGCCAAAGTA 2448
>seq2118
Length=7067
Score = 87.8 bits (96), Expect = 5e-12
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 251425 CACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAA-GCGAGA 251483
|| || ||||| | | | ||||| || | ||| | || || ||||| ||| ||| |
Sbjct 949 CAGACGTGGACTCGGAAGGCATCCGACACCTCAAACAGACGCTCCTTGAGGAAAGCGGCA 1008
Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543
|| ||||| | |||||| |||||||| ||||| || ||||| || ||||||||||| ||
Sbjct 1009 -GCTCCGTGGGCAATCATGCAATCACGTTCCATCTCTCCGAATCGCAGACCACCATCTCG 1067
Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGT 251570
|| | ||| ||| | ||||| |||||
Sbjct 1068 GGCACGACCTTCGACGGGCTGGCGAGT 1094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471398413009173
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |