Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq7045 156 5e-32
seq3104 156 5e-32
seq4231 129 7e-24
seq2493 125 9e-23
seq955 120 4e-21
seq1967 107 2e-17
seq3448 93.3 5e-13
>seq7045
Length=1413
Score = 156 bits (172), Expect = 5e-32
Identities = 230/326 (71%), Gaps = 6/326 (2%)
Strand=Plus/Plus
Query 18100 GGCGAGTCGCACGGGGCGGGCGTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCA 18159
|||||||| ||||| | ||| |||||||||||| | || || ||| |
Sbjct 1086 GGCGAGTCCCACGGCAAGTCAGTCTCGTGCATCATCGACAACTGCCCCCCCAACATTGCC 1145
Query 18160 CTGGCCGAGGCCGACATCCAGCCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTT 18219
|| ||||||||||||||||||| ||| | | || ||||| ||||||||| || |
Sbjct 1146 CTCACCGAGGCCGACATCCAGCCCCAGCTCAACCGCCGCCGCCCGGGCCAGTCGGCCATC 1205
Query 18220 TCCACGCCGCGCAACGAGCCCGATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTC 18279
| ||||| || ||||| ||||| |||| |||||| |||||||| ||||||||| ||
Sbjct 1206 ACGACGCCCCGGAACGAAAAGGATCGTGTCACCATCCACTCGGGCACCGAGAACGGCGTC 1265
Query 18280 ACGCTCGGCTCGCCCGTCGGCCTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTAT 18339
|| |||||| | || || |||| || ||||| |||||||||||| |||||
Sbjct 1266 ACCCTCGGCACCCCGATCCTCCTCACCGTCCCCAACGAGGACCAGCGGCCCAAGGACTAC 1325
Query 18340 TCCGACATGTGCAAGG------TGCCGCGGCCCTCACACGCCGACTACACCTACATGGCC 18393
||||| | || | ||||| ||| |||||||||| |||||| |||
Sbjct 1326 GGCGACAAGACCATCGACCTCTACCCGCGCCCCAGCCACGCCGACTGGACCTACCTGGAA 1385
Query 18394 AAGTACGGCATCAAGGCGTCGTCGGG 18419
||||||||| ||||||| ||||| ||
Sbjct 1386 AAGTACGGCGTCAAGGCCTCGTCCGG 1411
>seq3104
Length=5293
Score = 156 bits (172), Expect = 5e-32
Identities = 214/291 (74%), Gaps = 15/291 (5%)
Strand=Plus/Plus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | |||||| ||||| ||||| ||||||||||| |||||
Sbjct 1402 ACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAGGCCACGCTT 1461
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGC-CCG-AGAAAAAGATGCCCTCGACGGCGGCA 869296
||||||||| ||||||| | | || || ||| ||| ||||| ||||||||||| |||
Sbjct 1462 CTTGAGCCAGAAGATGGAG--GCAAAGGCACCGCTGAAGAAGATACCCTCGACGGCAGCA 1519
Query 869297 AAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTG---TTGATCCACTTCATC 869353
||| ||| ||| |||| |||||| | |||| | |||| | |||||| ||
Sbjct 1520 AAGGCGACGAGACGCTGAGCAAAG--GACGAG----TTCTTGTCCTGGATCCATCGGATG 1573
Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT-GGTC 869412
|||||||||||||| || | | | || | || || |||||| ||||||| |||
Sbjct 1574 GCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGGTT 1633
Query 869413 CTTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
| || || || ||||||| |||||||| || |||||||| ||||||||
Sbjct 1634 C-GTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTC 1683
Score = 154 bits (170), Expect = 2e-31
Identities = 185/250 (74%), Gaps = 1/250 (0%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| |||| |||||
Sbjct 1088 GCCTTCTGGTAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATG 1147
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| ||| ||||| | ||
Sbjct 1148 TTCTCCATGAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGACG 1207
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||
Sbjct 1208 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGC 1267
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930
|| || || || | |||| ||| ||||| | ||| || |||||| ||| ||||
Sbjct 1268 AGGGCGCAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATG 1327
Query 868931 ATCTGCCTGG 868940
|| | |||||
Sbjct 1328 ATGT-CCTGG 1336
>seq4231
Length=4255
Score = 129 bits (142), Expect = 7e-24
Identities = 299/448 (67%), Gaps = 17/448 (4%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
|||||||||||| || || |||| ||| ||||| || |||||||| || ||||||||
Sbjct 2879 CTGGTCGACGTACCGGGCAGTGTTGTTGAAGACACGAAGCATGGGGGTGACACCGTTGGA 2820
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
|||||||| || || | ||| | ||| | ||| || | ||| || | |||
Sbjct 2819 GGTACCGTTGGTACCAGCGATGTAAGAGCCAGTGGCACGGATTCGGTGGACGTTTAGGCC 2760
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
||| || || ||| ||||||||| | || || ||||| || || || || |||||
Sbjct 2759 GATACCACCCGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCATAAATACCCTC 2700
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304
|| ||| | |||||||| || || ||||| || || || || || | || ||
Sbjct 2699 AATGCTGTCCTCTTTCATGTCGACCAGGAAGCATGAGGACAGCTGAGGCTGGGGAGTACC 2640
Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364
|| |||||||| ||||| | || |||||| || | | |||||| || ||||||
Sbjct 2639 AGCATTGAAGAGGGTGGGGGAGGCATGGGTGAAGAATTTGCTCGACATCAGGTTGTAGGT 2580
Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424
| || || ||| | | |||||| |||| || ||||| | ||
Sbjct 2579 CTCCAGGACACGCTCAA---TATCGTC-----------ACCC-CAGATGCCGACAGACAC 2535
Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484
||||||| ||||| |||||| ||||| || | ||| | |||| ||||||||
Sbjct 2534 ACGCATGATCATGTGCTGGGGACGCTCAACAATCTTGCCATCAATCTTGAGGAGGTAGGA 2475
Query 1630485 CCGGCGCATG-GTCATGAGGCCAAAGTA 1630511
| || || | ||| ||| |||||||||
Sbjct 2474 TC-GCTCAAGAGTCTTGAAGCCAAAGTA 2448
Score = 113 bits (124), Expect = 6e-19
Identities = 288/443 (65%), Gaps = 8/443 (2%)
Strand=Plus/Minus
Query 1628162 ACTGGACGATCTCGGTGCACAGGTTGG-CCGACGTCGTCGTACCCAGGTTCTGCTGGTTG 1628220
||| || ||||||||||| || |||| | ||| | || |||||||||| |||||||
Sbjct 3318 ACTCGATAATCTCGGTGCAGAGATTGGAGCTACG-GATGGTGCCCAGGTTCTTCTGGTTG 3260
Query 1628221 GTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCC 1628280
| | ||||| | |||||||| ||||||| |||| |||||||||| ||||||||
Sbjct 3259 CTCTTGCGGTTGCAGTGGTCCTTGTAGAGCATGAAGGGGTTGCCGGTCTCGGTCTGCGCC 3200
Query 1628281 GCGACGATGGCCGACCAGATCTGGCGCGCGGGCACGACAGTCCGCGCGCGGCCCTNNNNN 1628340
||| |||||| |||||| || | || || | | || | ||||
Sbjct 3199 TCGAGGATGGCATACCAGAGCTTCTGGGCCTTCATGGTCTTGCGACCCTTGCCCGCCTTC 3140
Query 1628341 NNNNNNNNNNNNNNNNNNNNNTCAAAGGCCGCGCCGTAGCACTCGTGCAGGCCGGGCGCC 1628400
|| || || |||| ||||| ||| ||| ||||| |
Sbjct 3139 TCATACTTTTCGTAAAGAGCCTCGAACTCCTCGCCATAGCAGTCGGCCAGACCGGGGCAC 3080
Query 1628401 TCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCG---CGGCGCATAAAGAGG 1628457
||| ||||| | ||| | ||||| ||||| || | || || ||| |||||
Sbjct 3079 TCGTTGGGACACATGAGGGTCCAGT---CACCGTTCTTCTCGACACGCTTCATGAAGAGA 3023
Query 1628458 TCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTC 1628517
|| |||| || || || |||||||| || ||| |||||||||||||||||||
Sbjct 3022 TCGGGAATCCAGAGAGCCAGGAACAGGTCGCGGGCGCGGACCTCCTCCTTGCCGTGGTTC 2963
Query 1628518 TTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAG 1628577
|| ||||| || | || | | || |||||||| ||||| |||||| |||||||
Sbjct 2962 TTGCGCAGGTCAAGGAACTCAAAGACATCTGCGTGCCAGGGCTCAAGGTAGATGGCAAAG 2903
Query 1628578 GCGCCCTTGCGCTTGCCGCCGCC 1628600
|| || |||||| ||| ||
Sbjct 2902 GCACCAGGTCGCTTGTTGCCACC 2880
Score = 86.0 bits (94), Expect = 8e-11
Identities = 134/189 (71%), Gaps = 2/189 (1%)
Strand=Plus/Minus
Query 1627293 CGTCCACAGGCCGCGCGCCATCA-GGCGCTTGACCAGGTGGCGGTTGACCACGGTAAAGT 1627351
|| ||||||||| | | || || || ||||| ||| | ||||||| || || |
Sbjct 3974 CGACCACAGGCC-CATGTCAACAAGGTCCTTGAGCAGCCAGGGGTTGACGACCTGGAACT 3916
Query 1627352 CGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCGCACGCCTCGGTGT 1627411
|||| | ||| || |||||| |||||||||| |||| |||| | |||| |||
Sbjct 3915 CGCCAGCGAGGACACGGCGCTGGTAGATGTTGGAGGTGTAAGGCTCGAAGCACTCGTTGT 3856
Query 1627412 TGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGGAGCGAGTTGCGCA 1627471
|||||||||||||||| || |||| || ||||| | || | || || |||||| |
Sbjct 3855 TGCCCAGGATCTGCGAAGTACTGGCAGTAGGCATAGGGGCAAGCAGCAGACTGTTGCGAA 3796
Query 1627472 GGCCGTGCT 1627480
||||||||
Sbjct 3795 TGCCGTGCT 3787
>seq2493
Length=5875
Score = 125 bits (138), Expect = 9e-23
Identities = 93/109 (85%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
||| ||||||| |||||||||||||| || || ||| | || |||||| | || ||||||
Sbjct 2556 GCCTCCAACTATCTCGACATCAAGCCCCTTCTTGATGTCGGCTGCAAGACCGTCGCCAAC 2615
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCA 1592294
||||||||||||||||| ||||||||||| || ||||| || |||||||
Sbjct 2616 ATGATCAAGGGCAAGTCTCCCGAGGAGATTCGGAAGACTTTCAACATCA 2664
>seq955
Length=9345
Score = 120 bits (132), Expect = 4e-21
Identities = 140/189 (74%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 1574046 AAGAGGATCGACCTGCCGCCCGGACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGC 1574105
|||| | || ||||||| |||| ||||||||| || ||||||||||||| || ||| ||
Sbjct 1868 AAGAAGGTCACCCTGCCGGCCGGCCGCCACAAGCTGGTCATCCTCGACGAAGCTGACAGC 1927
Query 1574106 CTCACGTCGGCGGCCCAGCAGGCCCTGCGGTCCACCATGGAAAAGCACACCAACACGACG 1574165
| || |||| |||||||| || || || |||||||||| || ||||||||||
Sbjct 1928 ATGACCTCGGGCGCCCAGCAAGCACTCCGACGAACCATGGAAATCTACTCCAACACGACC 1987
Query 1574166 CGCTTTGCCCTGGCGTGCAACACGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGCTGC 1574225
| || ||| | || |||||| ||| | | |||||||| |||| ||| || |||
Sbjct 1988 AGATTCGCCTTTGCCTGCAACCAGTCCAACAAGATCATCGAGCCCCTACAATCGCGATGC 2047
Query 1574226 GCCATTCTG 1574234
||||| |||
Sbjct 2048 GCCATCCTG 2056
>seq1967
Length=7544
Score = 107 bits (118), Expect = 2e-17
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 19055 CGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAGCCGTGCTT 19114
||||||||| || || ||||| || || ||||| | |||||||||||||| |||||
Sbjct 1 CGGCGGCACCGTCACCTGCGTCATCCGTAATGTGCCCTCTGGCCTCGGCGAGCCCTGCTT 60
Query 19115 TGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACCAAGGGATT 19174
|||||| | |||||| ||||| ||||||||| |||| ||||| ||| ||||| ||
Sbjct 61 CGACAAGCTGCAGGCCGTCCTCGCACACGCCATGATGTCCATCCCCGCCGTCAAGGCCTT 120
Query 19175 CGAGATTGGCAGCGGGTTTGCGGGTGC 19201
||| ||||| ||| ||| ||| ||
Sbjct 121 TGAGTTTGGCTCCGGCTTTCTGGGCGC 147
>seq3448
Length=5504
Score = 93.3 bits (102), Expect = 5e-13
Identities = 257/386 (67%), Gaps = 16/386 (4%)
Strand=Plus/Minus
Query 511949 GGCGTGGACGCCTCGCGCAGTCACACCAACGACATCAACCGCGTGGCCGCCGTGCTGGGC 512008
||||| ||||| ||||| | ||||||||||| | | |||| || ||| | ||
Sbjct 917 GGCGTCGACGCTTCGCGGACATACACCAACGACCTGTGGCAAGTGGTCGAGGTGTTTGGT 858
Query 512009 ATCGAGGCCGCCGTGGCCGTGCTCTTTTCC--GAGATCAAGGCCGTCATCTCCTTTGACG 512066
|||||||| ||| | || ||||| || ||| | | ||| | | |||||||
Sbjct 857 ATCGAGGCAGCCC-GTTCG-GCTCTGGTCAAGGAGTTGACCAACGTGCTGGCGTTTGACG 800
Query 512067 GCACCTACGTCAACGACCGCCACTTTGCGCTGGCCACCGACACCATGTGCTGCCGCGGAT 512126
| ||||||||||| | || ||| |||||||| || || |||| | | | ||||
Sbjct 799 GTTCCTACGTCAACCATCGTCACATTGCGCTGCTGACAGATGTCATGACGTACAGAGGAT 740
Query 512127 CGGTGGTGGCCGTCACGCGCCACGGCTTCAACCGCGCCGACCACGGCTTC-CTGTCGCGG 512185
| | ||| || || || ||||| ||||||| || || ||| | | | ||| |||
Sbjct 739 CCATCTCGGCTGTGACCCGACACGGTATCAACCGTGCTGA-CACTGGTGCTCTGATGCGT 681
Query 512186 GCCTCTTTCGAAGAGACCGTCGACATCCTCTTTGACGCGGCGGCCTTTGCCGAGACCGAC 512245
|||||||| ||||| ||||| ||| | | || || || || | || | || | |
Sbjct 680 TGTTCTTTCGAGGAGACGGTCGAGATCTTGCTCGAGGCTGCCGCGTCTG--GTGAGCTAG 623
Query 512246 AAGATCACCGACG--GCTCGGTGACCGAGCCCATCATCCTGGGCCAGACGGCGCCCATCG 512303
| || |||| | ||||| || || |||| |||||||||| |||||| || |
Sbjct 622 ATGACTGCCGAGGTATCTCGGAGAACG------TCATGCTGGGCCAGATGGCGCCAATGG 569
Query 512304 GCACGGCCATCTCGGACGTGCTCGTG 512329
|||||| | || || |||||| ||
Sbjct 568 GCACGGGTAACTTTGATGTGCTCCTG 543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6105314984161593
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