Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq3104 116 1e-20 seq4231 102 3e-16 >seq3104 Length=5293 Score = 116 bits (128), Expect = 1e-20 Identities = 356/536 (66%), Gaps = 21/536 (4%) Strand=Plus/Minus Query 443349 GAGGAGATTGATCTCTCCAAGGACTTGGCCGATTGGAACGAACGACTATCTAGCCATGAA 443408 |||||||||||||| |||||||| | ||| |||||| | || || || | | || Sbjct 1893 GAGGAGATTGATCTATCCAAGGATCTCCACGACTGGAACAACCGCCTGACTGCCGACGAG 1834 Query 443409 CGCGATTTCTTCAAATGC---ATCTTGGCCTTCTTTGCACCGAGCGACGGTATCGTCGGT 443465 | | |||||| | | ||| | |||||||| || | ||||| |||||| Sbjct 1833 C---AGTTCTTCGTCTCCCACATCCTCGCCTTCTTCGCTGCCTCTGACGGCATCGTCAAC 1777 Query 443466 GAGAATCTGGTGACGCGTTTCTACGAAATGGTAGTGTACACCGAGGCCCGCTACTTCTAC 443525 ||||| || || ||| ||| || ||| | | |||||||||| | ||||||| Sbjct 1776 GAGAACCTTGTCGAGCGATTCAGCGGCGAGGTCCAGATCCCCGAGGCCCGATGCTTCTAC 1717 Query 443526 GCGTTCCAAGCCGCAATGGAGAACATTCACGCCGAGGTCTACAGTCAGTTGATCAA-GAC 443584 | ||||| | ||||||||||| ||| ||||| |||| || | | ||| ||| Sbjct 1716 GGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTAC--TC-GCTCCTCATTGAC 1660 Query 443585 AC-TAATTCCGAACGAAGACGAACAGCGGTCCATCTTCT-CATCGTTCAT---GACCACG 443639 || || || || || | || || || | ||| || || ||| ||||| Sbjct 1659 ACCTACATC--AAGGAGCCTGCTCAACGAACCTACCTCTTCAACGC-CATTGAGACCATC 1603 Query 443640 CCAGGCATCACTGAAAAGACTCGCTGGGCAAAACAGTGGCTCGAACGAGAAAATCTCAGC 443699 || ||||| | ||| | |||||| | | ||| || | || || | ||| | Sbjct 1602 CCCTGCATCCGCAAGAAGGCCGACTGGGCCATCCGATGGATCCAG-GACAAGAACTCGTC 1544 Query 443700 -TTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 || | |||| || ||||| ||||||| ||||| || | || || ||||| ||| Sbjct 1543 CTTTGCTCAGCGTCTCGTCGCCTTTGCTGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTT 1484 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||||| | || |||||||| || |||| || ||||||||| |||| Sbjct 1483 T-GCCTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCTGGCCTGACCTTTTCCAACG 1425 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 | || ||| ||| ||||||||| | || |||||| || || || ||| || || Sbjct 1424 AGCTCATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCATGCCTCCTCCACTCC 1369 >seq4231 Length=4255 Score = 102 bits (112), Expect = 3e-16 Identities = 203/294 (69%), Gaps = 20/294 (7%) Strand=Plus/Plus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | ||||| ||||||||| || || |||||||| || || ||| ||| || Sbjct 2835 CCCATGCTTCGTGTCTTCAACAACACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGA 2894 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGA---CATTGAACGGTT--TT 255095 || || || || |||||||||| ||||| |||||||| || | |||| ||| || Sbjct 2895 CCTGGTGCCTTTGCCATCTACCTTGAGCCCTGGCACGCAGATGTCTTTGA---GTTCCTT 2951 Query 255096 TACTGCTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTG 255155 || ||| | | || ||||| |||||| | |||||||||| | | | ||| Sbjct 2952 GAC--CTGCGCAAGAACCACGGCAAGGAGGAGGTCCGCGCCCGCGACCTGTTCCTGGCTC 3009 Query 255156 TCTGGTGCTGCGATCTGTTTATGCGACGCGTGGAACGAGACGAGAC-----CTGGAGCCT 255210 ||||| |||||| || ||| | ||||| ||||| || || ||||| ||| Sbjct 3010 TCTGGATTCCCGATCTCTTCATG--AAGCGTGT--CGAGAAGA-ACGGTGACTGGACCCT 3064 Query 255211 CATGTGTCCCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGA 255264 ||||||||||||| | |||||||| | ||||| | || || ||||| || Sbjct 3065 CATGTGTCCCAACGAGTGCCCCGGTCTGGCCGACTGCTATGGCGAGGAGTTCGA 3118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587883627512905