Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq3104 136 5e-27
>seq3104
Length=5293
Score = 136 bits (150), Expect = 5e-27
Identities = 528/815 (65%), Gaps = 21/815 (3%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| || || ||||||||||||||||| ||||| || | | | ||| ||||||||
Sbjct 1097 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 1156
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
|| || || ||||| | | || | | | || | | | | |||||| ||
Sbjct 1157 AAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTGCCGAGGGCGAC-GAGGAGGCG 1215
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
|| | |||| |||| ||||||| ||| |||| |||||| |||| ||| ||
Sbjct 1216 GTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCGCA 1275
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||||| || || | |||| ||| ||||||| || || || | |||| | ||
Sbjct 1276 GGGGAGGGCCTCGGTCAGGAACTCCTGCTCAATGGTGACGGCATCGGTGATGATGTCCTG 1335
Query 129967 AATGGTCTCCGTGC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTC 130023
||| || | ||| || | | ||| | | | || ||| || | |||| ||
Sbjct 1336 GATGACCTGCTTGCTGGCACGGCCCTTGAGGTGGGAGTGGAGGAGG--CATG-CAAAGTC 1392
Query 130024 CTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAG 130083
||| |||||||||||||| |||||||| || || || ||| ||| || ||||||||
Sbjct 1393 GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGCCAGGCATGAG 1452
Query 130084 ACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143
|| |||||||| | |||||| || | ||| | || ||||||||| ||||| ||
Sbjct 1453 GCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGATACCCTCGAC 1512
Query 130144 ACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGT-ATCAAACCACTTCA 130202
|| || || | |||||||| ||||||||| || | |||| | | ||| |
Sbjct 1513 GGCAGCAAAGGCGACGAGACGCTGAGCAAAGGA-CGAGTTCTTGTCCTGGATCCATCGGA 1571
Query 130203 TCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCT 130262
| ||||| | ||||| || ||| || |||| ||||| || || | ||||| |
Sbjct 1572 TGGCCCAGTCGGCCTTCTTGCGGATGCAGGGGATGGTCTCAATGGCGTTGAAGAGGTAGG 1631
Query 130263 TCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGA 130322
| || | || || |||||||| | || ||||| || || || ||| ||||
Sbjct 1632 TTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGCGAGTAGGTCTCGGAGTGGA 1691
Query 130323 CCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 130381
| | ||| || | ||| | ||||||| | || || ||| ||||| |||||
Sbjct 1692 TGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCATCGGGCCTCGGGGATCTGGACCTC- 1749
Query 130382 TCTGCAAAATTGTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAAC 130438
| || ||| | | || | ||||| || || || || || |||| || ||
Sbjct 1750 GCCGCTGAATCG--CTCGACAAGGTTCTCGTTGACGATGCCGTCAGAGGCAGCGAAGAAG 1807
Query 130439 GCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCA---GGGTCTTCCAGTCGTCA 130495
|| ||||| | | ||| ||| || | | ||| || | ||||||||||
Sbjct 1808 GCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGCGGTTGTTCCAGTCGTGG 1867
Query 130496 AGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCA 130530
|||||||| || ||||| | |||||| ||||||||
Sbjct 1868 AGATCCTTGGATAGATCAATCTCCTCGGCAGTCCA 1902
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618263360049240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |