Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06] 22,229 sequences; 49,382,781 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq2891 161 3e-34 seq1268 141 3e-28 seq2318 87.8 5e-12 >seq2891 Length=5131 Score = 161 bits (178), Expect = 3e-34 Identities = 443/673 (66%), Gaps = 8/673 (1%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 || || || || || || || |||||| |||| || || || | ||| | || ||||| Sbjct 3022 GACATCATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 3081 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || |||||| |||| |||||| | || || || || | || || || | || || Sbjct 3082 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 3141 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || ||||| || || ||| | | || | ||| || | || Sbjct 3142 GTCTTCGACGCCAAGCGCCTGATCGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAC 3201 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | | | || | ||| |||| || || | || |||||| Sbjct 3202 ATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCCGTCATCGAGGTT 3258 Query 349502 GAATATAAAGGTGA--ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559 || | || || || |||| | | || ||||| || || || || ||||| | Sbjct 3259 GAGTTCAAGGGCGAGAACAAGACC--TTCACCCCCGAGGAGATCTCCTCCATGGTCCTCA 3316 Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619 || ||| || | || || | || | || || || || | | ||||| | | Sbjct 3317 CCAAGATGCGAGAGACCGCCGAGTCCTACCTTGGCGAGACCGTCAACAACGCTGTCGTCA 3376 Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679 |||| || ||||| || || || ||||||| || || || ||||| ||| ||||| Sbjct 3377 CTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGCCTCATTG 3436 Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739 | || | || ||||| |||| || || |||||||| ||||| || ||||| || || | Sbjct 3437 CTGGCCTCAACGTTCTCCGAATCATCAACGAACCCACCGCTGCCGCCATTGCCTACGGTC 3496 Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799 | || || | || ||| || || |||| || || ||| | ||||||||||||| Sbjct 3497 TCGACAAGAAGATTGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGTACTT 3556 Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859 | ||||| || || || || |||| ||||| || || || || || | || || |||| Sbjct 3557 TCGATGTTTCGCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGTG 3616 Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919 | || || || ||||| || || || || || ||||||||| || |||||||| || | Sbjct 3617 ACACTCACCTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTTGTTAATGAGT 3676 Query 349920 TTAAGCGTCAAGC 349932 | || || ||||| Sbjct 3677 TCAAACG-CAAGC 3688 >seq1268 Length=8946 Score = 141 bits (156), Expect = 3e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||||||||| || | | ||||| || || ||||| ||||| || || || || || || Sbjct 4995 CATACCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 4936 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | ||||| || || || || || || || |||||||| || || || |||||||| Sbjct 4935 GCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGG 4876 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || | ||| ||||| ||||| | || || | ||| Sbjct 4875 AGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTC 4816 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||||||||| || || || || || |||||||| Sbjct 4815 CACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4765 Score = 129 bits (142), Expect = 2e-24 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563 |||| ||| ||||| | | |||||||||||||| || ||||| || || || || || Sbjct 5226 TTACTGACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTA 5167 Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623 || || | || || || ||||| || || || ||||||||||| || || ||||| || Sbjct 5166 GTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 5107 Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683 ||| || || || || || |||||||| || | || || || ||||| | ||| | Sbjct 5106 AGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA 5047 Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || | |||||||| || || || || ||||| |||||||| Sbjct 5046 CTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 4993 Score = 98.7 bits (108), Expect = 3e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || || || || || ||||| || ||||| || || || Sbjct 4767 CATACCACCACGGAGGCGGAGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTC 4708 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | | || || ||||| ||||| || || || || || || || || ||||| ||||| Sbjct 4707 GGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGG 4648 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| || || ||||| || || || | || || || || |||| || || | || Sbjct 4647 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTC 4588 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || || || || | ||||| || || || || || || Sbjct 4587 CACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGAC 4549 >seq2318 Length=6151 Score = 87.8 bits (96), Expect = 5e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || || || || ||| || || || || || || Sbjct 932 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 873 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || ||||| || || || || ||||||||||| || || ||||| || || || Sbjct 872 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 813 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || | || || || || || | || || | || || Sbjct 812 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 753 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | |||||| || || || || || ||||| |||||||| Sbjct 752 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514822841814887