Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq2891 161 3e-34
seq1268 141 3e-28
seq2318 87.8 5e-12
>seq2891
Length=5131
Score = 161 bits (178), Expect = 3e-34
Identities = 443/673 (66%), Gaps = 8/673 (1%)
Strand=Plus/Plus
Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321
|| || || || || || || |||||| |||| || || || | ||| | || |||||
Sbjct 3022 GACATCATCGCCAACGACCAGGGTAACCGAACCACTCCCTCTTTCGTCGGTTTCACCGAC 3081
Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381
|| |||||| |||| |||||| | || || || || | || || || | || ||
Sbjct 3082 ACCGAGCGTCTGATCGGTGATGCCGCCAAGAACCAGGTCGCCATGAACCCCCAGAACACC 3141
Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441
|| || || || ||||| || || ||| | | || | ||| || | ||
Sbjct 3142 GTCTTCGACGCCAAGCGCCTGATCGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAC 3201
Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501
| || || || || || | | | || | ||| |||| || || | || ||||||
Sbjct 3202 ATGAAGCACTTCCCCTTCAA-GATCATCGACAAG--GGTGGCAAGCCCGTCATCGAGGTT 3258
Query 349502 GAATATAAAGGTGA--ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAG 349559
|| | || || || |||| | | || ||||| || || || || ||||| |
Sbjct 3259 GAGTTCAAGGGCGAGAACAAGACC--TTCACCCCCGAGGAGATCTCCTCCATGGTCCTCA 3316
Query 349560 TTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTA 349619
|| ||| || | || || | || | || || || || | | ||||| | |
Sbjct 3317 CCAAGATGCGAGAGACCGCCGAGTCCTACCTTGGCGAGACCGTCAACAACGCTGTCGTCA 3376
Query 349620 CTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTG 349679
|||| || ||||| || || || ||||||| || || || ||||| ||| |||||
Sbjct 3377 CTGTCCCCGCCTACTTCAACGACTCCCAGCGCCAGGCCACCAAGGATGCCGGCCTCATTG 3436
Query 349680 CGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGC 349739
| || | || ||||| |||| || || |||||||| ||||| || ||||| || || |
Sbjct 3437 CTGGCCTCAACGTTCTCCGAATCATCAACGAACCCACCGCTGCCGCCATTGCCTACGGTC 3496
Query 349740 TTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTT 349799
| || || | || ||| || || |||| || || ||| | |||||||||||||
Sbjct 3497 TCGACAAGAAGATTGAGGGCGAGCGCAACGTTCTCATCTTCGATCTTGGTGGTGGTACTT 3556
Query 349800 TTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTG 349859
| ||||| || || || || |||| ||||| || || || || || | || || ||||
Sbjct 3557 TCGATGTTTCGCTCCTGACCATTGAGGAGGGTATCTTCGAGGTCAAGTCTACCGCCGGTG 3616
Query 349860 ATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAAT 349919
| || || || ||||| || || || || || ||||||||| || |||||||| || |
Sbjct 3617 ACACTCACCTGGGTGGTGAGGACTTCGACAACCGTCTCGTTAACCACTTTGTTAATGAGT 3676
Query 349920 TTAAGCGTCAAGC 349932
| || || |||||
Sbjct 3677 TCAAACG-CAAGC 3688
>seq1268
Length=8946
Score = 141 bits (156), Expect = 3e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
||||||||| || | | ||||| || || ||||| ||||| || || || || || ||
Sbjct 4995 CATACCACCGCGCAGACGAAGAACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 4936
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| ||||| || || || || || || || |||||||| || || || ||||||||
Sbjct 4935 GCTGAGAGTTCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGTCGCTGTTGATCAGG 4876
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| ||||| || ||||| || || | ||| ||||| ||||| | || || | |||
Sbjct 4875 AGGAATGCCTTCCTTGTCCTGGATCTTCGATTTCACATTGTCAATGGTGTCGGACGATTC 4816
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| ||||| || | ||||||||||| || || || || || ||||||||
Sbjct 4815 CACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACGAAGATCTGCAT 4765
Score = 129 bits (142), Expect = 2e-24
Identities = 169/234 (72%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 140504 TTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATA 140563
|||| ||| ||||| | | |||||||||||||| || ||||| || || || || ||
Sbjct 5226 TTACTGACCGCCACGGAGACGGAGAACAAGATGAAGGGTCGACTCCTTCTGGATGTTGTA 5167
Query 140564 ATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATC 140623
|| || | || || || ||||| || || || ||||||||||| || || ||||| ||
Sbjct 5166 GTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTACCAGCAAAGATAAGTCGCTGCTGGTC 5107
Query 140624 AGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG 140683
||| || || || || || |||||||| || | || || || ||||| | ||| |
Sbjct 5106 AGGGGGGATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTGTCAATGGTATCGCTCGA 5047
Query 140684 TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || | |||||||| || || || || ||||| ||||||||
Sbjct 5046 CTCCACCTCCAGAGTGATGGTCTTTCCAGTGAGAGTCTTGACAAAGATCTGCAT 4993
Score = 98.7 bits (108), Expect = 3e-15
Identities = 153/219 (70%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || || || || || ||||| || ||||| || || ||
Sbjct 4767 CATACCACCACGGAGGCGGAGGACGAGGTGGAGTGTTGACTCCTTCTGAATGTTGTAGTC 4708
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| | || || ||||| ||||| || || || || || || || || ||||| |||||
Sbjct 4707 GGCGAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAAATCAGGCGCTGCTGGTCAGG 4648
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686
|||||| || || ||||| || || || | || || || || |||| || || | ||
Sbjct 4647 AGGAATACCCTCCTTATCTTGGATCTTCGACTTGACGTTGTCGATCGTGTCGGAAGACTC 4588
Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725
|| || || || | ||||| || || || || || ||
Sbjct 4587 CACCTCGAGGGTGATAGTCTTACCAGTGAGGGTCTTGAC 4549
>seq2318
Length=6151
Score = 87.8 bits (96), Expect = 5e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569
||||||||| | | || || || || || || ||| || || || || || ||
Sbjct 932 ACCACCACGCAGGCGGAGGACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGCT 873
Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629
| || || ||||| || || || || ||||||||||| || || ||||| || || ||
Sbjct 872 CAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCGGGGGG 813
Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689
|| || || || ||||| || || | || || || || || | || || | || ||
Sbjct 812 GATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 753
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | |||||| || || || || || ||||| ||||||||
Sbjct 752 CTCGAGGGTGATTGTCTTCCCCGTGAGGGTCTTGACAAAGATCTGCAT 705
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1514822841814887
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |