Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20brasiliense_20[genbank_20GCA_5F001680685.1_202016-07-06]
22,229 sequences; 49,382,781 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq4231 259 5e-64
seq2043 152 6e-32
seq3104 104 3e-17
>seq4231
Length=4255
Score = 259 bits (286), Expect = 5e-64
Identities = 504/737 (68%), Gaps = 38/737 (5%)
Strand=Plus/Plus
Query 53233 GCGTGTCCGTGAGACGTACGACTTAATG---AGCCAAAAGTACTTTACGCACGCCACGCC 53289
|||||||| ||||| ||| || | ||| ||| || | ||| || || ||| | ||
Sbjct 2567 GCGTGTCCTGGAGACCTACAACCTGATGTCGAGCAAA---TTCTTCACCCATGCCTCCCC 2623
Query 53290 AACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGAT 53349
||||| ||||| |||||||| || |||||| |||| ||||||||||| | ||
Sbjct 2624 CACCCTCTTCAATGCTGGTACTCCCCAGCCTCAGCTGTCCTCATGCTTCCTGGTCGACAT 2683
Query 53350 GAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAA 53409
||| || ||| || || || || || || || |||||| |||||| ||||||||
Sbjct 2684 GAAAGAGGACAGCATTGAGGGTATTTATGATACTCTCAAGACCTGTGCCATGATCTCCAA 2743
Query 53410 GTGGTCGGGTGGTATCGG--TA----TCCACTGCTCGAACGTCCGTGCGAACGGCACACC 53463
| | ||||||||||||| || ||||| |||| ||||||| | ||| |
Sbjct 2744 GATGGCGGGTGGTATCGGCCTAAACGTCCAC----CGAA--TCCGTGCCACTGGCTCTTA 2797
Query 53464 AATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCGCGTCTTCAACAA 53523
||| || || ||||| | || | || || || ||||| || |||||||||||
Sbjct 2798 CATCGCTGGTACCAACGGTACCTCCAACGGTGTCACCCCCATGCTTCGTGTCTTCAACAA 2857
Query 53524 CACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCT 53583
||| |||||||||||| |||||||||| ||||| || | || |||||||||||
Sbjct 2858 CACTGCCCGGTACGTCGACCAGGGTGGCAACAAGCGACCTGGTGCCTTTGCCATCTACCT 2917
Query 53584 CGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGA 53643
||||| |||||||| || | | ||||| || || ||||| ||| || || | ||
Sbjct 2918 TGAGCCCTGGCACGCAGATGTCTTTGAGTTCCTTGACCTGCGCAAGAACCACGGCAAGGA 2977
Query 53644 AGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAA 53703
||| | ||| ||| |||||||| ||||| |||||||| || ||||||||| |
Sbjct 2978 GGAGGTCCGCGCCCGCGACCTGTTCCTGGCTCTCTGGATTCCCGATCTCTTCATGAAGCG 3037
Query 53704 GGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCT-CCAGG 53762
|| |||||| ||| || ||| ||| ||||| || |||||||||||||| || | |
Sbjct 3038 TGTCGAGAAGAACGGTGACTGGACCCTCATGTGTCCCAACGAGTGCCCCGGTCTGGCCGA 3097
Query 53763 GTGTCTACGGTGAGGAGT---------TTAACGAGATGTATCGGACGTACGCAGTTCAGG 53813
|| ||| || ||||||| || |||| | |||| || | | || | |||
Sbjct 3098 CTG-CTATGGCGAGGAGTTCGAGGCTCTTTACGAAAAGTAT--GA-GAAGGCGGGCAAGG 3153
Query 53814 GCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGG 53873
| ||| |||| | ||||| | || | ||| |||| |||||| || |||
Sbjct 3154 GTCGC------AAGACCATGAAGGCCCAGAAGCTCTGGTATGCCATCCTCGAGGCGCAGA 3207
Query 53874 TGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGA 53933
||||| || | || | |||| ||||||||| |||| |||||||||||||
Sbjct 3208 CCGAGACCGGCAACCCCTTCATGCTCTACAAGGACCACTGCAACCGCAAGAGCAACCAGA 3267
Query 53934 AGAACATCGGCGTCATC 53950
||||| | ||| ||||
Sbjct 3268 AGAACCTGGGCACCATC 3284
Score = 105 bits (116), Expect = 7e-18
Identities = 553/860 (64%), Gaps = 52/860 (6%)
Strand=Plus/Plus
Query 55096 TGACTTTGACAAGCTTCACGAAGTGACGCGTGTTGTGACTCGGAACCTGAACCGGGTCAT 55155
|||||| | ||| | ||||| || || | ||||| ||| ||||||||| || | ||
Sbjct 3401 TGACTTCCAGAAGTTGCACGACGTCACACAGGTTGTCGTTCGCAACCTGAACAGGATTAT 3460
Query 55156 CGACAAGAATTACTACCCG---ACTGAAGCGGCGCGCAAGTCCAACCTCCGGCACCGGCC 55212
|||| ||| ||||||| || ||||| ||||| |||| | || ||||| ||
Sbjct 3461 CGACGTGAACCACTACCCTGTTACGGAAGCT---CGCAACAGCAACATGCGACACCGACC 3517
Query 55213 CATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATGCTCGGAT--TGCCCTTC 55270
||| | | ||||| ||||| | || || ||| | ||||| | |||| |||
Sbjct 3518 CATTGGTGTTGGTGTCCAGGGTCTTGCTGATGCTTTCCT--TGCTCTGCGCATGCCTTTC 3575
Query 55271 GACTCGGAACCTGCTCGAGAAATTAACCAGGACATCTTC-AGTCGCATCTACTTTGCAGC 55329
|| || ||||| || | ||| || | |||||| || | |||||| ||| ||
Sbjct 3576 GAGTCTCCCGAGGCTCGTGAGCTCAACAAGCAGATCTTCGAGACT-ATCTACCATGCTGC 3634
Query 55330 GCTCGAGGAGTCGTGTCATCTGGCTATGAGCGAGGGGACCTACGAGACGTTCCGTGATTC 55389
||| | ||| || ||||| | | ||||| ||||| || ||| | ||
Sbjct 3635 CCTCACTGCTTCGGTGCAGCTGGCCAAGGAGGAGGGTCCCTACTCCACCTTCAAGGGCTC 3694
Query 55390 GCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGG---GGCAAG---TCTGACCCCAT 55443
|| || |||| ||||||||||||| | ||| | ||| ||||||| |
Sbjct 3695 TCCCGCCTCTGAGGGTATTCTCCAGTTCGACATGTGGAATGTGAAGCCTTCTGACCTCTG 3754
Query 55444 G---TTTGACAAGTTGA---AGCATGACATTCACTTGTGGGGCCTACGCAACTCCCTGCT 55497
| | || || | | |||| | || | | ||| | |||||| |||||
Sbjct 3755 GGACTGGGAGAACCTCAGGGAGCAGGTCAAGGA---GCACGGCATTCGCAACAGTCTGCT 3811
Query 55498 CGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGCGTTCGA 55557
| || || ||||| || || || | |||||| |||||||||||||| |||||
Sbjct 3812 GCTTGCCCCTATGCCTACTGCCAGTACTTCGCAGATCCTGGGCAACAACGAGTGCTTCGA 3871
Query 55558 GCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTTGTCATGATCAA 55617
||| ||||| |||||||||||| |||||| ||| || || ||||| || | ||
Sbjct 3872 GCCTTACACCTCCAACATCTACCAGCGCCGTGTCCTCGCTGGCGAGTTC--CAGG-TCGT 3928
Query 55618 CAAGCAC---CTCGTCAAGGACCTGCAGAAGATCAACAAGTGGAACCCGCAG--ATCAAG 55672
||| | | || |||||||||| | || | |||| | | | || ||
Sbjct 3929 CAACCCCTGGCTGCTCAAGGACCTTGTTGACATGGGCCTGTGGT--CGGATGCCATGAAA 3986
Query 55673 A--CGGAT-ATTGTGCGGAACGGGGGGTCCGTCCAGAA--TCTGGAGATTCCTCTGCGTC 55727
| || || |||| |||||| ||| ||||||| || | ||| | ||
Sbjct 3987 AACCGAATCATTGCCGAGAACGGT---TCCATCCAGAACATCCCCAACATCCCCGCCGAG 4043
Query 55728 -TCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGA---AGAGTCTGATTGACATG 55783
|||||| | ||| ||| || ||||||||| | ||| || ||| || | |||
Sbjct 4044 GTCAAGGCCCTCTACAAGACCGTCTGGGAGATTTCGCAGCGCCAG-GTCG--TTCAGATG 4100
Query 55784 AGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATGGAGAAT 55843
||| || || ||||| | ||| || ||||||||||| || |||||| |||| || |
Sbjct 4101 GCTGCCGACCGAGGTGCCTTCATTGATCAGTCCCAGTCCCTCAACATCCACATGAAGGAC 4160
Query 55844 CCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACG 55903
|| | ||| |||| | | | ||||||||| ||| |||||| || || ||||||
Sbjct 4161 CCCACCATGGGCAAGATCACCAGCATGCACTTTGCCGGCTGGAAGCTCGGCCTGAAGACG 4220
Query 55904 GGTATGTACTATCTGCGGAC 55923
|| |||||||| ||||| ||
Sbjct 4221 GGCATGTACTACCTGCGAAC 4240
>seq2043
Length=6959
Score = 152 bits (168), Expect = 6e-32
Identities = 244/347 (70%), Gaps = 10/347 (3%)
Strand=Plus/Plus
Query 117299 AGGCGAGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCG 117358
|| ||||| || | ||||||| || || |||||| ||||| || || || | ||||
Sbjct 2058 AGTCGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCG 2117
Query 117359 AATTGTCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAG 117418
|| | |||||| ||||| | | ||| | |||||| | ||||||||||| || ||||
Sbjct 2118 AAGTTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGA 2177
Query 117419 TTGACAATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACG 117478
|| || || ||||| || ||||| ||||| || |||||||| || | |||
Sbjct 2178 CCGATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACA 2237
Query 117479 TAGCCCGCCAGCTGAGCCACCTTCATGTC--TGACGTCAGGTTCTTCTTGAGGCAGGCAT 117536
|| || |||| | |||||||| |||| |||| |||||| |||||| ||| || |
Sbjct 2238 TAACCAGCCAATTCCACCACCTTCTTGTCCTTGAC--CAGGTTTCTCTTGAAGCAAGCGT 2295
Query 117537 AAATCACCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGA 117596
| | ||||||||||||| ||||| | |||||| || ||||||||| ||| |
Sbjct 2296 AGAGAACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGC---A 2352
Query 117597 TGTCCTCAGC---GCTAAAGTTGGCCAAGTCCCGGTGGATGAAATCA 117640
||| ||||| ||| ||| | | ||||||| ||||||||||
Sbjct 2353 TGTTATCAGCCATGCTGAAGAGGATGAGCTCCCGGTTGATGAAATCA 2399
Score = 129 bits (142), Expect = 6e-25
Identities = 205/294 (70%), Gaps = 0/294 (0%)
Strand=Plus/Plus
Query 152026 CGCGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAAC 152085
|| || ||| | || || | ||||| |||||| |||||||| || || | || ||
Sbjct 2061 CGAGTAAAGGTATAACGAGGACTGGCGGCATCCGAACCACCTGCGAGTCGAGAACCGAAG 2120
Query 152086 TGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTC 152145
| |||| ||||| ||| ||||| |||||| | ||||| || ||||| |||| |
Sbjct 2121 TTTCCACTTGGCTCTAGGCAGTTGATGTTGTTCGATCCCACAAAGTTCTGGGCCAGACCG 2180
Query 152146 ACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205
| || || ||| ||| |||||||||||||| || |||||||| || | | ||
Sbjct 2181 ATGATGGTCTGCTGGAGAGATGCTTCACCGTGGTGGTATGCCGTCTGTTCAGACACATAA 2240
Query 152206 CCCGCCAACTGCGCCACCTTCATGTCCGTCGTCAGGTTCTTCTTGAGACAGGCGTAAATC 152265
|| ||||| | | |||||||| ||||| | |||||| |||||| || ||||| |
Sbjct 2241 CCAGCCAATTCCACCACCTTCTTGTCCTTGACCAGGTTTCTCTTGAAGCAAGCGTAGAGA 2300
Query 152266 ACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTG 152319
||||||||||| || || || || |||| || ||| ||||| ||| ||
Sbjct 2301 ACCTTGCGCTGACCAGGCTTGAAGCCATCCAGGACCGAAGGGATCGATCGCATG 2354
Score = 96.9 bits (106), Expect = 4e-15
Identities = 229/341 (67%), Gaps = 4/341 (1%)
Strand=Plus/Plus
Query 118003 GTTCAGCACGAGCCCCTTGATATGGGAACCGTCCAGATCCGCATCGGTCATGATCATCAG 118062
||| | || ||| ||||||||||| ||| || ||||| ||| ||||||||||||||
Sbjct 2810 GTTGATCAGGAGACCCTTGATATGACTACCATCGTGATCCTGATCAGTCATGATCATCAG 2869
Query 118063 GCGGCCGTACCGTAAATCTCTCAGGGAGT-TATAAACCTTACCATGTTGGAGCCCGAGGA 118121
||||||| || || |||| | | | | || |||| || | || || ||||
Sbjct 2870 ATGGCCGTATCG-AAGACTCTTGGTGTCTGTGTACACCTGCTTGTGCTTCAGACCCAGGA 2928
Query 118122 TCTTTTTAAGGTTGGAAAATTCCTCATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAA 118181
|| || | ||| | ||||| || | || | ||| | | | |||| || || |
Sbjct 2929 ACTGCTTGATGTTCTGGATTTCCTGGTTCTTGGTGATCTGGTCGACGCTGGCATCGCGGA 2988
Query 118182 CGTTGCGCGGCTTACCCCGCAGTGGAAACACGCCAAACTTGTCACGGCCCA-CAACGCTC 118240
||||| || |||||| || ||||| || || |||| | ||| || | | | ||||
Sbjct 2989 CGTTGAGCATCTTACCACGGAGTGGGAAGACACCAATGTGGTCGGGGTCAAGGATGGCTC 3048
Query 118241 AAGCCGGCAATAGCAAGGGCCTTCGCCGAGTCACCCTCGGTAATAATAAGAGTGCACTCG 118300
|| | || ||| || |||| || |||||||| || || | || |||||||||||
Sbjct 3049 -GTCCAGAAACAGCCAGACCCTTGGCGGAGTCACCTTCAGTCAGGATCAGAGTGCACTCA 3107
Query 118301 GTGCTGCGATGAGTACCGGCCCAATTAGCATCATCCAGCTT 118341
|| || ||||||| ||| | || || || |||||||
Sbjct 3108 TGGCCTCGGCGAGTACCTGCCAAGTTGGCCTCGACCAGCTT 3148
>seq3104
Length=5293
Score = 104 bits (114), Expect = 3e-17
Identities = 536/836 (64%), Gaps = 58/836 (7%)
Strand=Plus/Plus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| |||||||| ||||| || || ||||||||||| || | | ||||||||||||||
Sbjct 1097 TAGTCACCGACACGCTTCTCGAAGAAGTTGGTCTTGCCACCGAGGGAGATGTTCTCCATG 1156
Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCCC--CAAACTGTGCC-ATGAGG 74579
||||||| ||||| | || ||| | |||||| | | | | | | ||||
Sbjct 1157 AAGTCGAAGGGGTTGGTGGCCTTGTAGAC---CTTCTCGTTGCCGAGGGCGACGAGGAGG 1213
Query 74580 CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTG 74639
|| || || || || | ||||||||| |||| | || | |||||||| || |
Sbjct 1214 CGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTCGGCGTTCATGCCGAGCAGGGCG 1273
Query 74640 CACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACA--ATCT 74697
|| || || |||||||| | ||||| ||| | | | | ||| || | || |
Sbjct 1274 CAGGGGAGGGCCTCGGTCAGGAACTCCTGCTCAA--TGGTGACGGCATCGGTGATGATGT 1331
Query 74698 TGTGAATGTCTT------TGGAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACG 74750
|| ||| | | ||| | ||| ||| ||||| |||| || | || |
Sbjct 1332 CCTGGATGACCTGCTTGCTGGCACGGCCCTTG------AGGTGGGAGTGGAGGAGGCATG 1385
Query 74751 GCAAACTCCTGATGCGAG--CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGC 74808
|||| || | || || || || || | || | || || ||||| | ||||
Sbjct 1386 -CAAAGTC--GGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAAAAGGTCAGGC 1442
Query 74809 CAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGA 74868
||||||| || ||||||||||| | ||| ||||||| |||| ||| ||||||||||
Sbjct 1443 CAGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAGGCAAAGGCACCGCTGAAGAAGA 1502
Query 74869 TGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACG----GTGCATCGGAAGTC 74924
| || ||||| ||||||||||| || || || || || | || | | |||
Sbjct 1503 TACCCTCGACGGCAGCAAAGGCGACGAGACGCTGAGCAAAGGACGAGTTCTT-----GTC 1557
Query 74925 ----ATCCAAGTCTGA--GCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGAT 74977
||||| || || ||||| || || ||| | | ||| |||| || || ||
Sbjct 1558 CTGGATCCA--TCGGATGGCCCAGTCGGC-CTTCTTGCGGATGCAGGGGATGGTCTCAAT 1614
Query 74978 CGCTTGGAAGAGGCTTGCCTTC--TCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGT 75035
|| | ||||||| | ||| | | || ||||||| | ||||||| | ||
Sbjct 1615 GGCGTTGAAGAGG--TAGGTTCGTTGAGCAGGCTCCTTGATGTAGGTGTCAATGAGGAGC 1672
Query 75036 GAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCC 75095
||||| ||||| || || || ||| | | |||| | ||||||| | || |||
Sbjct 1673 GAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCATCGGGCC 1732
Query 75096 TCTGCAATCTGTACAT--CCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGT 75153
|| | ||||| || | || |||| || | | | ||||| ||||||||||||
Sbjct 1733 TCGGGGATCTGGACCTCGCCGCTGAATCGCTC--GACAAGGTTCTCGTTGACGATGCCGT 1790
Query 75154 CCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GA 75210
| ||||| ||||| || || || | || ||| |||| ||| |||| |
Sbjct 1791 CAGAGGCAGCGAAGAAGGCGAGGATGTGGGAGACGAAGAACTGCTCGTCGGCAGTCAGGC 1850
Query 75211 GTTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266
| |||| ||| || | || ||| | | ||||||||||||| | |||||||||
Sbjct 1851 GGTTGTTCCAGTCGTGGAGATCCTTGGATAGATCAATCTCCTCGGCAGTCCAGAAA 1906
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547063949194200
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