Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 257 1e-63 seq9 170 2e-37 seq8 109 5e-19 >seq6 Length=4141359 Score = 257 bits (284), Expect = 1e-63 Identities = 631/954 (66%), Gaps = 2/954 (0%) Strand=Plus/Plus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 |||||||| ||||| || || |||||||| | |||||| | |||||| || || Sbjct 1574248 GAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAA 1574307 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || ||| | || || || | || | |||||||| || || ||||| | |||| Sbjct 1574308 AGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCC 1574367 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 |||||||||||| | || | || ||||| ||| | ||| | || || ||| | Sbjct 1574368 TTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGC 1574427 Query 23207 GTCTGAGCGTGAACACGTCGCACGTACCT-GCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 ||||||| | | ||| || ||| ||| || | |||| |||||| ||||| || Sbjct 1574428 TTCTGAGCCTTGATT-GTCTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTACAGAGC 1574486 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || ||||| | || || |||||||| ||||| || | | | || ||||| || | Sbjct 1574487 CTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGT 1574546 Query 23326 CCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAA 23385 ||| || |||||||| || |||| |||||||| || ||||| || || ||| Sbjct 1574547 CCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAA 1574606 Query 23386 CAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAA 23445 || || ||||| || |||||||| || || |||||| | ||| | || || || Sbjct 1574607 AAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGGAAATCGAA 1574666 Query 23446 CACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCC 23505 || || | ||||| ||||||||||| | |||||| || || |||| ||| ||||| || Sbjct 1574667 GACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTGCCACC 1574726 Query 23506 CTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGA 23565 ||| ||||| || || || ||||||||| | || | ||||| || || | ||| || || Sbjct 1574727 CTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGA 1574786 Query 23566 CGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACC 23625 | ||| || || | || || | || |||| ||| || | | ||| Sbjct 1574787 TGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGACC 1574846 Query 23626 TATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTC 23685 || || || || || || ||||| || || || ||||| |||||||| ||||| Sbjct 1574847 GATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTC 1574906 Query 23686 GATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGC 23745 || ||||| || || | | |||||||| || || |||| ||| | | || || | Sbjct 1574907 AATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCC 1574966 Query 23746 GGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGT 23805 ||| ||| || || ||| || ||||| ||| | | ||||| |||||||| || Sbjct 1574967 GGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTATGT 1575026 Query 23806 GTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTA 23865 || | | | || || || || || ||||| | | || ||||| ||||||| Sbjct 1575027 CTCCAAGACTCGCTCGATATCATCACCCCAGATACCAACAGACACACGCATGATCATGTG 1575086 Query 23866 TTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTT 23925 ||||| | ||||| | |||| ||| |||| || ||||| || | || || || Sbjct 1575087 CTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCCAAAGTCTT 1575146 Query 23926 AAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 || ||||| || | || | || || || || | || ||||| || | ||| Sbjct 1575147 GAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGTCCAA 1575200 >seq9 Length=3473953 Score = 170 bits (188), Expect = 2e-37 Identities = 482/731 (66%), Gaps = 21/731 (3%) Strand=Plus/Minus Query 57570 ATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTG 57629 |||||| | |||||||| ||||| || || || || ||||| | || || | || || Sbjct 1909335 ATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTC 1909276 Query 57630 TCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGA-GAGAAATT--TTATTAAA 57686 || |||||||| ||| ||| | || | | |||| ||| | || || | Sbjct 1909275 TCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTCT 1909216 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||| | | || || ||||| || || |||||||| || |||||||| | ||||| || Sbjct 1909215 CACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGA 1909156 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || || | | ||||| | ||||| ||||| || || | || Sbjct 1909155 TTCAGTGGCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATG 1909096 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | ||||| || | || || || |||||||| || ||| | ||||| || | Sbjct 1909095 GAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGCC 1909036 Query 57867 GAGA-AACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGA 57925 || ||| || || |||||||| || || || || ||| ||| |||||||| || Sbjct 1909035 CAGCGAACCTAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGA 1908977 Query 57926 GTGGTCAATCAAATGGATAAA----AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCG 57981 ||| | ||| |||||| | ||| || || | || ||| || | || | | Sbjct 1908976 CTGGGCCATCCGATGGATCCAGGATAAGGGCT----CCTCCTTTGCCCAGCGTCTCGTTG 1908921 Query 57982 CGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGA 58041 | || || || || || ||||| ||||| || ||| || | || || ||| | | Sbjct 1908920 CCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCA 1908861 Query 58042 AGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGG 58101 |||| || || || ||||| || ||||| || ||||||| | || || || ||||||| Sbjct 1908860 AGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGG 1908801 Query 58102 GTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCAC----ATTGTCAATAAACCGACG 58157 |||| || ||||| ||||| ||||| | |||||||| | ||| | | | | Sbjct 1908800 GTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTGCCAGC-AAG 1908742 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | ||| ||| ||| || ||||| || || ||| | || || | |||||| ||||| Sbjct 1908741 C-AGAT--GATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTTCTCACC 1908685 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 ||||| || || ||| | ||||| |||||| ||| | ||| | ||||||||| Sbjct 1908684 GAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAATACATTGAG 1908625 Query 58278 TTTGTTGCCGA 58288 || || || || Sbjct 1908624 TTCGTCGCTGA 1908614 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || || || ||||||||| | || || || | Sbjct 2591422 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2591481 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | ||||| | || ||||||||| ||| | || |||||| Sbjct 2591482 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 2591541 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| | || || || ||||||| || Sbjct 2591542 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 2591601 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || ||||| || Sbjct 2591602 AACATCCAGAAGGAGTCCACCCTCCACCTGGTCCT 2591636 >seq8 Length=4055048 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| |||| ||||| || || ||| |||| ||||| | || Sbjct 2978381 CATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTC 2978440 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | | || | ||||| | || ||||||||| ||| | || |||||||| Sbjct 2978441 CGACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCA 2978500 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| || | || ||||| ||||| ||| | || ||| ||| | ||||| || Sbjct 2978501 GCAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAA 2978560 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || || || ||||||||||| || || Sbjct 2978561 CATTCAGAAGGAGTCCACTCTTCATCTTGTTCT 2978593 Score = 86.0 bits (94), Expect = 6e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| || | || || || ||||||||||| || ||||||||||| ||| |||| Sbjct 2978815 GGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGCAAGCAGCTGGA 2978874 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||||| || ||||| || || || || |||||||| || || || Sbjct 2978875 AGATGGCCGCACCTTGAGCGACTACAACATCCAGAAGGAGTCAACTCTTCACCTCGTTCT 2978934 Query 31405 TAGACTGAGGGGCGG 31419 |||| | ||||| Sbjct 2978935 CCGACTTCGCGGCGG 2978949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764015149760