Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq9 163 6e-35 seq6 100 6e-16 >seq9 Length=3473953 Score = 163 bits (180), Expect = 6e-35 Identities = 303/443 (68%), Gaps = 15/443 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||||||||| ||||| || |||||||| |||||||| ||||| ||||| |||||| Sbjct 1908924 GTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGG 1908865 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 ||||||| | ||| | |||||||||| || | |||||| ||| |||| ||| | ||| Sbjct 1908864 CTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGAC 1908805 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCT----GTTGA--AAAAGGGTTTTGTTGAT 102091 || |||||||| |||||||| ||| | || | | |||||| || Sbjct 1908804 GAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCTCACCTCAAGGGTCGTG----- 1908750 Query 102092 ACCCCATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 ||| |||| | | ||| | || || ||||||| |||||| ||||| || || Sbjct 1908749 ---CCAGCAAG-CAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAG 1908694 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 |||||||| | | || || | | | || ||||||| | | |||| || Sbjct 1908693 TTTCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGCAA 1908634 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAAT 102271 |||||||| || || || ||| || | || | | || || ||| ||| || Sbjct 1908633 TACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGAGAAGGTCTACAAG 1908574 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | |||||||||||| |||||||| || || ||||| | ||||||||||| ||| Sbjct 1908573 GCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTT 1908514 Query 102332 GAAAAGAGAGTCGCCGAGTATCA 102354 || ||| | || ||||| || || Sbjct 1908513 GAGAAGCGTGTTGCCGACTACCA 1908491 >seq6 Length=4141359 Score = 100 bits (110), Expect = 6e-16 Identities = 179/256 (70%), Gaps = 4/256 (2%) Strand=Plus/Plus Query 94786 CCGAGTCCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCC 94845 |||| || ||||| |||||||||| || || ||| |||||||| || || ||| Sbjct 1574845 CCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCC 1574904 Query 94846 TCAATGCTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACTGTT 94905 ||||| || || || | | | | | |||||| || || | |||||| ||| | | Sbjct 1574905 TCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGC-TGAGGGGT 1574963 Query 94906 -CCACAATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATA 94964 || ||| || || |||||||||||||| || || | | || ||||| |||| || Sbjct 1574964 GCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGATTGTA 1575023 Query 94965 TGTTTCAATGACAGATTTGATGTC-TGATCCGTGAATGCCGACAGCCACACGCATAATCA 95023 ||| || | ||| | ||| || | | || || | || |||| ||||||||| |||| Sbjct 1575024 TGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATGATCA 1575082 Query 95024 TGTCCTGAGGGCGCTC 95039 ||| |||||||||||| Sbjct 1575083 TGTGCTGAGGGCGCTC 1575098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989578573368740