Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6 172 7e-38 seq9 138 1e-27 >seq6 Length=4141359 Score = 172 bits (190), Expect = 7e-38 Identities = 632/980 (64%), Gaps = 30/980 (3%) Strand=Plus/Plus Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 1574247 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1574306 Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067 ||| || | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 1574307 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 1574366 Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 1574367 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 1574425 Query 63128 GACTC-GAGCCTTTATTATA----GAT--TTGTATCTCCTTTCTC-----TTTCGTATAG 63175 | || ||||||| ||| | || ||| |||||| ||| ||||||| || Sbjct 1574426 GCTTCTGAGCCTTGATTGTCTTGCGACCCTTGCC-CTCCTT-CTCGAACTTTTCGTACAG 1574483 Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235 || | |||| || ||||| | | | | | | ||| || || | || Sbjct 1574484 AGCCT---------CGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGG 1574534 Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295 ||||||| | ||| || |||| | | || || ||||| || |||||||| ||||| Sbjct 1574535 GCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 1574594 Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355 ||| || | || ||||| | | | ||||| || || ||||| ||||| Sbjct 1574595 AAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATC 1574654 Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 ||||| | | | |||||| ||||| || || | ||| ||||| | | | || || || Sbjct 1574655 AAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCG 1574714 Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475 ||||| || ||||| || | || | ||| ||||| || | || | | ||| |||| Sbjct 1574715 CTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAAC 1574774 Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TA 63533 || ||| || ||| |||| |||||||||| ||| || ||| | ||||||||| | Sbjct 1574775 AACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTG 1574834 Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593 | ||| |||||| || || || ||||| || ||||| | || || || | || Sbjct 1574835 CACATT--TAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 1574892 Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653 || ||||| || || || || || || |||| | || | || || |||| |||| Sbjct 1574893 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGG 1574952 Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713 | ||| || || ||||| || | || || ||||| ||||| || | || ||| Sbjct 1574953 GGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGAC 1575012 Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGAC 63772 | |||||||| ||||| | || || ||||| || || | || || | || Sbjct 1575013 ATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACAC 1575071 Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832 |||||| | |||||||||||| | || | ||| || || || || | | ||| || Sbjct 1575072 ACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGA 1575131 Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892 | |||||||| || || ||||| || | |||| || || || || || | ||| | Sbjct 1575132 TCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGC 1575191 Query 63893 CGAATTGAGCTTATCCTTAT 63912 || | | || ||||||| Sbjct 1575192 AGAGTCCAACTCCTCCTTAT 1575211 >seq9 Length=3473953 Score = 138 bits (152), Expect = 1e-27 Identities = 365/552 (66%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| ||||||||||| | | || | ||||| || || || || || ||||| || || Sbjct 1908793 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 1908852 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 |||||| || ||||| || ||||| ||||| | || |||||||| || || || || Sbjct 1908853 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 1908912 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCA-CTTTTGAG 33771 ||||||||||| || | || || | || || | || || ||||| | || | Sbjct 1908913 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGCCCTTATCCTGGATCCATCGGATG-G 1908971 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 1908972 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 1909031 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || || | || || ||||| | || || | || |||||||||| Sbjct 1909032 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 1909091 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 1909092 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 1909151 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||||| || | | || || || || || |||||| ||| || || || || | | Sbjct 1909152 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1909211 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 1909212 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 1909271 Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1909272 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1909331 Query 34129 AGATGTCATGAT 34140 | || | ||||| Sbjct 1909332 AAATCT-ATGAT 1909342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629814230475840