Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02]
428 sequences; 43,948,611 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq6 172 7e-38
seq9 138 1e-27
>seq6
Length=4141359
Score = 172 bits (190), Expect = 7e-38
Identities = 632/980 (64%), Gaps = 30/980 (3%)
Strand=Plus/Plus
Query 62948 AGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 63007
||| || || || || || || ||||| | || | | || | || || ||||||||
Sbjct 1574247 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1574306
Query 63008 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63067
||| || | ||| || || | || | ||| || ||||| ||| || |||||
Sbjct 1574307 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 1574366
Query 63068 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63127
||| || || |||||||| | || || ||| |||| | || | ||| || | ||| |
Sbjct 1574367 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 1574425
Query 63128 GACTC-GAGCCTTTATTATA----GAT--TTGTATCTCCTTTCTC-----TTTCGTATAG 63175
| || ||||||| ||| | || ||| |||||| ||| ||||||| ||
Sbjct 1574426 GCTTCTGAGCCTTGATTGTCTTGCGACCCTTGCC-CTCCTT-CTCGAACTTTTCGTACAG 1574483
Query 63176 AGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGG 63235
|| | |||| || ||||| | | | | | | ||| || || | ||
Sbjct 1574484 AGCCT---------CGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGG 1574534
Query 63236 ACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCA 63295
||||||| | ||| || |||| | | || || ||||| || |||||||| |||||
Sbjct 1574535 GCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCA 1574594
Query 63296 AAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATC 63355
||| || | || ||||| | | | ||||| || || ||||| |||||
Sbjct 1574595 AAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATC 1574654
Query 63356 GAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415
||||| | | | |||||| ||||| || || | ||| ||||| | | | || || ||
Sbjct 1574655 AAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCG 1574714
Query 63416 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 63475
||||| || ||||| || | || | ||| ||||| || | || | | ||| ||||
Sbjct 1574715 CTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAAC 1574774
Query 63476 AATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATAT--TA 63533
|| ||| || ||| |||| |||||||||| ||| || ||| | ||||||||| |
Sbjct 1574775 AACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTG 1574834
Query 63534 CTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTG 63593
| ||| |||||| || || || ||||| || ||||| | || || || | ||
Sbjct 1574835 CACATT--TAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTA 1574892
Query 63594 TCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGG 63653
|| ||||| || || || || || || |||| | || | || || |||| ||||
Sbjct 1574893 TCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGG 1574952
Query 63654 TGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAA 63713
| ||| || || ||||| || | || || ||||| ||||| || | || |||
Sbjct 1574953 GGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGAC 1575012
Query 63714 AGTAGATTGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGAC 63772
| |||||||| ||||| | || || ||||| || || | || || | ||
Sbjct 1575013 ATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACAC 1575071
Query 63773 ACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGA 63832
|||||| | |||||||||||| | || | ||| || || || || | | ||| ||
Sbjct 1575072 ACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGA 1575131
Query 63833 TTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAAC 63892
| |||||||| || || ||||| || | |||| || || || || || | ||| |
Sbjct 1575132 TCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGC 1575191
Query 63893 CGAATTGAGCTTATCCTTAT 63912
|| | | || |||||||
Sbjct 1575192 AGAGTCCAACTCCTCCTTAT 1575211
>seq9
Length=3473953
Score = 138 bits (152), Expect = 1e-27
Identities = 365/552 (66%), Gaps = 9/552 (2%)
Strand=Plus/Plus
Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655
||| ||||||||||| | | || | ||||| || || || || || ||||| || ||
Sbjct 1908793 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 1908852
Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715
|||||| || ||||| || ||||| ||||| | || |||||||| || || || ||
Sbjct 1908853 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 1908912
Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCA-CTTTTGAG 33771
||||||||||| || | || || | || || | || || ||||| | || |
Sbjct 1908913 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGCCCTTATCCTGGATCCATCGGATG-G 1908971
Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831
|||| || ||||||||| | || || || || || ||||| || ||||||||| ||
Sbjct 1908972 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 1909031
Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891
| || || | || || ||||| | || || | || ||||||||||
Sbjct 1909032 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 1909091
Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951
| || || ||||| || |||||||| || | |||||| | ||||| || || ||
Sbjct 1909092 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 1909151
Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011
||||| || | | || || || || || |||||| ||| || || || || | |
Sbjct 1909152 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1909211
Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 34068
|| | ||| | | || || | |||| | || ||||| || | || ||| |
Sbjct 1909212 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 1909271
Query 34069 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 34128
| || | ||| | || || | ||||| || || ||||| ||||| || ||||| | ||
Sbjct 1909272 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1909331
Query 34129 AGATGTCATGAT 34140
| || | |||||
Sbjct 1909332 AAATCT-ATGAT 1909342
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629814230475840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |