Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9 242 5e-59 seq6 147 3e-30 >seq9 Length=3473953 Score = 242 bits (268), Expect = 5e-59 Identities = 572/851 (67%), Gaps = 22/851 (3%) Strand=Plus/Minus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 ||||| | |||||| |||||||||| |||||| |||| ||||| ||||| | || ||| Sbjct 1909342 ATCAT-AGATTTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGA 1909284 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 | ||||| |||||||| || |||| ||| | | || | |||| ||||| | Sbjct 1909283 TTGATCTCTCCAAGGATCTCCACGACTGGAACAACCGCCTAACTGCTGATGAGCAGTTCT 1909224 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCT-G 125189 || | || ||||| | || ||||| || | ||| ||||| ||||||||||| || || | Sbjct 1909223 TTGTCTCTCACATCCTTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCG 1909164 Query 125190 TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGT-GCTTTTACGGATTCCA 125248 | || |||||| | ||| | || || |||| |||| |||| ||||| ||||| Sbjct 1909163 TCGAG-CGATTCAGTGGCGAGGTCCAGATCCCTGAGGC-TCGTTGCTTCTACGGCTTCCA 1909106 Query 125249 AATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCG 125308 |||||||| |||||| | || || || | ||||| || || |||| ||||| Sbjct 1909105 GATCATGATGGAGAACATTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAA 1909046 Query 125309 CGATCC-GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTA 125367 || || || | ||| || ||||| ||||| || || || | || | || || | Sbjct 1909045 GGAGCCCGCCCAGCGAACCTAT-CTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAA 1908987 Query 125368 AAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGAC 125427 | |||||| | |||| || || |||||| | || | || || | ||| | | | Sbjct 1908986 AGAAGGCTGACTGGGCCATCCGATGGATCCAGGATAAGGGCTCCTCCTTTGCCCAGCGTC 1908927 Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 | || || || || || || ||||| |||||||| ||| || || ||||||| | Sbjct 1908926 TCGTTGCCTTTGCTGCTGTTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCT 1908867 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAG 125547 ||||||||||||| || |||||||| || ||||| | |||||| | || ||||| | Sbjct 1908866 GGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTG 1908807 Query 125548 ACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT 125607 ||||||| || ||| |||||||||| || || | ||| | | | | || Sbjct 1908806 ACGAGGGTCTTCACACTGACTTTGCCTGCCTCCT------CCACTCT---CACCTCAAGG 1908756 Query 125608 GCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | | ||||| | | | | || | || | || |||||||| | || || || | Sbjct 1908755 GTCGTGCCAGCAAGCAGATGATCCAGGATATCATCACTGATGCCGTCACCATTGAGCAGG 1908696 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 ||||||| |||||| | || || | | | |||||||||| | || ||| Sbjct 1908695 AGTTTCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGACCTCATGAAGC 1908636 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC--CG-CAAGATTT 125784 | ||||| ||||| || || |||||||| || || ||||| || ||| | | Sbjct 1908635 AATACATTGAGTTCGTCGCTGATCGTCTCCTTGTCG---CTCTTGGCAACGAGAAGGTCT 1908579 Query 125785 ACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACT 125844 |||| |||| || ||||| || |||||| | ||| || || | || |||||||||| Sbjct 1908578 ACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACT 1908519 Query 125845 TTTTCGAGAAG 125855 | || |||||| Sbjct 1908518 TCTTTGAGAAG 1908508 >seq6 Length=4141359 Score = 147 bits (162), Expect = 3e-30 Identities = 317/465 (68%), Gaps = 12/465 (3%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || ||||| ||| | ||| ||||| | || ||||||||| | || Sbjct 1574729 CAGGGTGGCAACAAGCGACCAGGTGCTTTTGCCATCTACCTCGAGCCTTGGCACTCTGAT 1574670 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 || || || || | || | || || ||| ||| || |||| || ||| | || Sbjct 1574669 GTCTTCGATTTCCTTGATCTCCGTAAGAACCATGGTAAGGAGGAGGTCCGTGCCCGTGAT 1574610 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CAACGACGGTGGC 97052 | || ||| || ||| | || ||| | ||||||||||| || || |||||| Sbjct 1574609 CTTTTCCTTGCCCTTTGGATCCCTGATCTTTTCATGAAGCGTGTTGAAAAGAACGGTG-- 1574552 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||||| || ||||||||| || || || || || |||| |||| || || || Sbjct 1574551 -ACTGGACACTGATGTGCCCCAACGAGTGCCCTGGCCTCGCCGACTGCTATGGAGAGGAA 1574493 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGC-CGATACGTGAGACGAGTCGATGC 97171 || ||||| |||| | |||| | |||||| | || |||| | || | || Sbjct 1574492 TTCGAGGCTCTGTACGAAAAGTTCGAGAAGGAGGGCAAGGGTCGCAAGAC-AATCAAGGC 1574434 Query 97172 ACGAGAA-CTGTGGAAGGCCA-TCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 | |||| || ||| | |||| || ||| ||| ||| ||||| |||| || | ||| Sbjct 1574433 TC-AGAAGCTTTGGTACGCCATTCTTGA-GGCCCAGACTGAGACCGGAAACCCATTCATG 1574376 Query 97230 CTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGC 97289 |||||||||||| || || ||||| ||||||||| || | || |||||| || Sbjct 1574375 CTCTACAAGGATGCCTGCAACCGCAAGAGCAACCAAAAGAACCTCGGTACCATCCGAAGC 1574316 Query 97290 TCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAG 97334 ||||| || ||||| |||||| | |||||| |||| |||||| Sbjct 1574315 TCCAACCTTTGCACTGAAATTATCGAGTACTGTGCTCCTGACGAG 1574271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055235333280