Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq9 113 7e-21 seq11 104 4e-18 >seq9 Length=3473953 Score = 113 bits (124), Expect = 7e-21 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| ||||| ||||||||||||||||| ||||| Sbjct 1618012 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATTCAAGGAATCACCAAGCCCGCTAT 1618070 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| ||||||||||| || ||||||||| |||||| Sbjct 1618071 CCGACGTCTCGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 1618111 Score = 80.6 bits (88), Expect = 4e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| |||| ||| | |||| |||||| || || |||| ||| | Sbjct 1618174 TGATCTACGAGGAGACCCGTGGTGTCCTCAAGACCTTCCTTGAGGGTGTCATCCGTGACG 1618233 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 || || || || |||||||| || || ||||||||||| ||| | || ||||||| | Sbjct 1618234 CTGTCACATACACTGAGCACGCCAAGCGCAAGACTGTCACATCCCTCGACGTCGTCTACG 1618293 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | || || || || |||| | || ||||| || ||||| Sbjct 1618294 CTCTCAAGCGACAGGGACGTACCCTCTACGGTTTCGGTGGTTAA 1618337 >seq11 Length=2773753 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | ||||| |||||||| || ||||||||||| ||||| Sbjct 1235023 GCCAAGCGTCACCGAAAGATCT-TGCGAGACAACATCCAGGGTATCACCAAGCCCGCTAT 1235081 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 ||| ||||| |||||||| ||||| ||||||||| | |||| Sbjct 1235082 CCGACGTCTCGCTCGTCGAGGTGGTGTCAAGCGTATTTCTG 1235122 Score = 84.2 bits (92), Expect = 3e-12 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || |||| || |||| || | ||| | |||| |||||| || ||| || | ||| | Sbjct 1235180 TGATCTACGAGGAGACCCGCGGTGTCCTTAAGACATTCCTCGAGGGCGTCATTCGTGACG 1235239 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || |||||||||||| || || || ||||| ||||| || | ||| | ||||| | Sbjct 1235240 CCGTCACCTATACCGAGCATGCCAAGCGCAAGACAGTCACATCTCTCGATGTTGTCTACG 1235299 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | |||| || |||||||| | |||| ||||| || ||||| Sbjct 1235300 CCCTGAAGCGACAAGGCCGCACCCTTTACGGTTTCGGTGGTTAA 1235343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074808676604