Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq6 178 2e-39 seq9 145 1e-29 >seq6 Length=4141359 Score = 178 bits (196), Expect = 2e-39 Identities = 620/958 (65%), Gaps = 16/958 (2%) Strand=Plus/Plus Query 62897 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCA 62956 ||| || || || || || || ||||| | || | | || | || || |||||||| Sbjct 1574247 AGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCA 1574306 Query 62957 AAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 63016 ||| || | ||| || || | || | ||| || ||||| ||| || ||||| Sbjct 1574307 AAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATC 1574366 Query 63017 CTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGAC 63076 ||| || || |||||||| | || || ||| |||| | || | ||| || | ||| | Sbjct 1574367 CTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAA- 1574425 Query 63077 GACTC-GAGCCTTTATTATAGATTTGTATCTCCTTTCTCTT----TCGTATAGTGTATAC 63131 | || ||||||| ||| | ||| | |||| | || ||| | | ||| Sbjct 1574426 GCTTCTGAGCCTTGATTGTC---TTGCGAC-CCTTGCCCTCCTTCTCGAACTTTTCGTAC 1574481 Query 63132 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATC 63191 | ||||| || ||||| | | | | | ||||| || || | || |||||| Sbjct 1574482 AGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATC 1574541 Query 63192 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 63251 | | ||| || |||| | | || || ||||| || |||||||| |||||||| || Sbjct 1574542 AGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCA 1574601 Query 63252 ATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 63311 | || ||||| | || | ||||| || || ||||| ||||| ||||| Sbjct 1574602 AGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGGAAA 1574661 Query 63312 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTT 63371 | | | |||||| ||||| || || | ||| ||||| | | | || || || ||||| Sbjct 1574662 TCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTG 1574721 Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 || ||||| || | || | ||| ||||| || | || | | ||| |||| || ||| Sbjct 1574722 CCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCA 1574781 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATAT--TACTAATTG 63489 || ||| |||| |||||||||| ||| || ||| | ||||||||| | | ||| Sbjct 1574782 TTCGATGTACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATT- 1574840 Query 63490 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63549 |||||| || || || ||||| || ||||| | || || || | || || |||| Sbjct 1574841 -TAGACCGATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGA 1574899 Query 63550 TACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAC 63609 | ||||| || || || || |||| | || | || || |||| |||| | || Sbjct 1574900 TTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAG 1574959 Query 63610 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63669 || || ||||| || | || || ||||| ||||| || | || ||| | |||| Sbjct 1574960 GGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGTGAAGAACTTGCTAGACATCAGAT 1575019 Query 63670 TGTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATT 63728 |||| ||||| | || || ||||| || || | || || | |||||||| Sbjct 1575020 TGTATGTCTCCAAGACTCGCTCGATATCATCACCCCAGA-TACCAACAGACACACGCATG 1575078 Query 63729 AACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63788 | |||||||||||| | || | ||||| || || || | | ||| ||| ||| Sbjct 1575079 ATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCAATCTTGAGGAGGTATGATCGCTCC 1575138 Query 63789 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGT 63846 ||||| || || ||||| || | |||| || || || || || | ||| | |||| Sbjct 1575139 AAAGTCTTGAAGCCAAAGTATTGGTATTGGAAATCGCGGTCATAGACAATGGCAGAGT 1575196 >seq9 Length=3473953 Score = 145 bits (160), Expect = 1e-29 Identities = 361/544 (66%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 33318 GTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 33377 ||| ||||||||||| | | || || |||||||| || || || || ||||| || || Sbjct 1908793 GTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGCATGAGACC 1908852 Query 33378 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGC 33437 |||||| || ||||| || ||||| ||||| | ||| |||||||| || || || || Sbjct 1908853 ACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCCTCAACAGC 1908912 Query 33438 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC---TGTCATGTATCCA-CTTTTGAG 33493 ||||||||||| || | || || | || || | || || ||||| | || | Sbjct 1908913 AGCAAAGGCAACGAGACGCTGGGCAAAGGAGGAGCCCTTATCCTGGATCCATCGGATG-G 1908971 Query 33494 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33553 |||| || ||||||||| | || || || || || ||||| || ||||||||| || Sbjct 1908972 CCCAGTCAGCCTTCTTTCGGATGCAGGGAATGGTCTCAATGGCGTTGAAGAGATAGGTTC 1909031 Query 33554 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33613 | || || | || || ||||| | || || | || |||||||||| Sbjct 1909032 GCTGGGCGGGCTCCTTGATGTATGTGTCGATGAGGAGGGAGTAGGTCTCGGAATGAATGT 1909091 Query 33614 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTAC 33673 | || || ||||| || |||||||| || | |||||| | ||||| || || || Sbjct 1909092 TCTCCATCATGATCTGGAAGCCGTAGAAGCAACGAGCCTCAGGGATCTGGACCTCGCCAC 1909151 Query 33674 AAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATA 33733 ||||| || | | || || || || || || ||| ||| || || || || | | Sbjct 1909152 TGAATCGCTCGACGAGGTTCTCGTTGACGATACCATCAGAGGCAGCGAAGAAAGCAAGGA 1909211 Query 33734 CATGTTTTATAAAATATTTTTCGTCTGGTGTTA---GTTTATTCCAATCATTGATATCTT 33790 || | ||| | | || || | |||| | || ||||| || | || ||| | Sbjct 1909212 TGTGAGAGACAAAGAACTGCTCATCAGCAGTTAGGCGGTTGTTCCAGTCGTGGAGATCCT 1909271 Query 33791 TAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCC 33850 | || | ||| | || || | ||||| || || ||||| ||||| || ||||| | || Sbjct 1909272 TGGAGAGATCAATCTCCTCAGCAGTCCAGAAGGAAGCCTCAGCCTTCTTGTACATTTGCC 1909331 Query 33851 AGAT 33854 | || Sbjct 1909332 AAAT 1909335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943867232480