Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9 120 3e-22 seq8 109 5e-19 seq10 91.5 1e-13 >seq9 Length=3473953 Score = 120 bits (132), Expect = 3e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || ||| |||| ||||| ||||| | Sbjct 2591422 AAGATGCAGATTTTCGTCAAGACCCTCACGGGGAAGACGATCACCCTTGAGGTGGAGTCT 2591481 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | ||| | |||| || || || ||||||||||| || || ||||| Sbjct 2591482 TCCGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGCATCCCCCCCGAC 2591541 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || || ||||| ||||| ||| | |||||| ||||||| | ||| ||| Sbjct 2591542 CAGCAGCGCCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGCCGCACCCTGAGCGACTAC 2591601 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 2591602 AACATCCAGAAGGAGTCCACC 2591622 >seq8 Length=4055048 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || ||||| || || | || || || || || | || Sbjct 2978382 ATGCAGATCTTCGTCAAGACCTTGACCGGCAAGACCATTACCCTCGAGGTTGAGTCTTCC 2978441 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || ||||| ||||||||||| || || ||||| || Sbjct 2978442 GACACTATTGACAACGTCAAGTCCAAGATTCAGGACAAGGAGGGCATCCCCCCCGACCAG 2978501 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || || |||||||| ||| | ||||| |||||| |||| ||||||||| Sbjct 2978502 CAACGCTTGATTTTCGCCGGCAAGCAGCTTGAGGACGGCCGCACTCTCTCTGATTACAAC 2978561 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || ||||| | ||| | ||| | || | || || ||| Sbjct 2978562 ATTCAGAAGGAGTCCACTCTTCATCTTGTTCTCCGCCTCCGTGGTGGT 2978609 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || ||||| || |||||||| || || ||||| Sbjct 2978807 AAGATTCAGGACAAGGAGGGTATTCCTCCGGATCAGCAGCGTCTTATCTTCGCTGGCAAG 2978866 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | || ||| ||||||| | ||| |||||||| || || || || || | || Sbjct 2978867 CAGCTGGAAGATGGCCGCACCTTGAGCGACTACAACATCCAGAAGGAGTCAACTCTTCAC 2978926 Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445 | ||| | ||| | ||||| || Sbjct 2978927 CTCGTTCTCCGACTTCGCGGCGG 2978949 >seq10 Length=3085006 Score = 91.5 bits (100), Expect = 1e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 22227 TTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGT 22286 ||| || || || | || || || || ||||||| || || || || | || ||| | Sbjct 1539726 TTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTCGAGTCCTCGGACACCAT 1539785 Query 22287 GGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCT 22346 ||| || |||| || || || ||||||||||| ||||| || || ||||| || || Sbjct 1539786 CGACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGGATTCCCCCGGACCAACAGCGACT 1539845 Query 22347 TATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAA 22406 || || || || || ||| | |||||| ||| || ||||||| |||||||| || || Sbjct 1539846 GATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTCTCTCCGACTACAACATCCAGAA 1539905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419725810593820