Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq9 176 8e-39 seq8 156 8e-33 seq10 138 2e-27 seq11 91.5 3e-13 >seq9 Length=3473953 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| ||| || |||||||| || |||||||| || ||| Sbjct 2591651 CCACCGCGGAGGCGGAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 2591592 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || ||||| | || |||||||| || Sbjct 2591591 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCGGGGGGG 2591532 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 2591531 ATGCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 2591472 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||| || || |||||||||||||||||||| |||||||| Sbjct 2591471 TCAAGGGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAAATCTGCAT 2591425 >seq8 Length=4055048 Score = 156 bits (172), Expect = 8e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | || | || || |||||||| || || ||||| ||||| ||| Sbjct 2978608 CCACCACGGAGGCGGAGAACAAGATGAAGAGTGGACTCCTTCTGAATGTTGTAATCAGAG 2978549 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || | | ||| |||||||| || Sbjct 2978548 AGAGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATCAAGCGTTGCTGGTCGGGGGGG 2978489 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| | ||||||| || || ||||| | || || || Sbjct 2978488 ATGCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCAATAGTGTCGGAAGACTCAACC 2978429 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | ||| ||||| || || || | |||||||||||| |||||||| ||| Sbjct 2978428 TCGAGGGTAATGGTCTTGCCGGTCAAGGTCTTGACGAAGATCTGCATGATG 2978378 >seq10 Length=3085006 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || |||||||| || | ||||| || | |||||| || ||||| || Sbjct 1539905 TTCTGGATGTTGTAGTCGGAGAGAGTTCGGCCATCCTCAAGCTGCTTACCAGCGAAGATC 1539846 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 |||| |||||||| || ||||| || |||||||| || ||||| | |||||| ||| Sbjct 1539845 AGTCGCTGTTGGTCCGGGGGAATCCCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 1539786 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | |||||||| || ||||| |||||||| ||||| Sbjct 1539785 ATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAA 1539727 >seq11 Length=2773753 Score = 91.5 bits (100), Expect = 3e-13 Identities = 437/679 (64%), Gaps = 43/679 (6%) Strand=Plus/Minus Query 224981 CGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAAGCA 225040 ||||| |||||||||| | || ||| |||| || ||||| || || || ||||||| Sbjct 2043206 CGCCATTGGATGTACTCGGAAGGAGTCTTGTCGAGATGGTTATCGATGTGAGCGAAAGCA 2043147 Query 225041 TGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGT-CGG 225099 ||||| | ||| || || || ||||| |||| | | ||| |||| || Sbjct 2043146 TGCTGCTTAATGTAGGCGATACGGATGTTCTCGTGCTGGTAGATCTCACCCTGAGTGGGG 2043087 Query 225100 TTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCAAT 225159 || | ||| || ||||| || ||||| || |||| |||||| ||||| ||||| || || Sbjct 2043086 ATGAG-CTCACCAGTGAGCACGTTGATCAGAGTAGACTTGCCAGCACCGTTGGGACCGAT 2043028 Query 225160 CACGCCAATCCGGGA----TGA---CATTGCAACCTGCGAGTTCACGTTGCTGAAGATCT 225212 ||| |||| ||||| || || || || | || || | ||| | | Sbjct 2043027 GACGGCAATACGGGAGCCTAGAGAGCACTGGAA--GGAGATGTCCTGGATTTGAGGCTTG 2042970 Query 225213 CAGG-GCCAGTTTGGTAAGCAAAGGCCA------CGCCACGCAGCTTCATGATGGCACGG 225265 ||| |||| |||| |||| || | |||| || ||| || | Sbjct 2042969 GAGGTACCAG---GGTACTGGAAGGACATGTTGGTGGCACGGAG------GATAGCCTTG 2042919 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGTCACCGCG 225325 |||||| | | |||||| ||||| || ||||| ||||| ||| || | | Sbjct 2042918 GCCTTGGTCTTGACACCCTCGAGGAAACCAGGCTCAGGGAAAGTGAACTCCATCTCGGAT 2042859 Query 225326 TCCTTCAGGTCGTAGTAAGA---TGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGG 225382 || || || |||||||| |||| |||| || || ||||| |||| |||| Sbjct 2042858 TCACCAAGCTCATAGTAAGACTTGGCAG--AGGGGTTGC-GGGCGACGAAGGCAGCCAGG 2042802 Query 225383 TTTCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAAT-TGCCGAGCACAC 225441 || || || | ||||||||| | |||||| || ||||| ||| | ||| || Sbjct 2042801 TTACCCTTGTAGCGCTTGAGCTTGAAG---CGCTCGTAGTGGACAATGTGCTG-GCAGAC 2042746 Query 225442 TGCGTCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACG-ACACGTTCGTCAGGCCCT 225500 ||| ||||| ||||||||||| ||||| ||||| || | || | | | | Sbjct 2042745 GTTGTCGAGGAAACCAGAGTCGTGAGACACGATGATAGAAGTGCAAG---GAGA-GTTGA 2042690 Query 225501 TGAGGTGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCA 225560 |||||| | |||||| ||||| | || |||| ||||| ||||| ||||| | Sbjct 2042689 TGAGGTACTCCTCGAGCCACTTAACGTTCTTCACATCCAAATGGTTGGTAGGCTCGTCAA 2042630 Query 225561 GAAGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGC 225620 ||||||| || || | | | || || ||| || |||| |||||||| ||||| | Sbjct 2042629 GAAGCAGAATATCGGGAGCCTCGAAGACGGCACGGCACAGAGCGAGCTTCATCTTCCAAC 2042570 Query 225621 CCCCGGACAGGGAGCCGAT 225639 | || || |||| || ||| Sbjct 2042569 CACCAGAAAGGGCGCTGAT 2042551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921617469320160