Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9 374 2e-98 seq6 251 1e-61 >seq9 Length=3473953 Score = 374 bits (414), Expect = 2e-98 Identities = 600/847 (71%), Gaps = 20/847 (2%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| || ||| |||||| || ||||||||||| || ||||||| Sbjct 1909326 ATGTACAAGAAGGCTGAGGCTTCCTTCTGGACTGCTGAGGAGATTGATCTCTCCAAGGAT 1909267 Query 42369 ACGGCCGGCTGGGAGTCA-----CTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATAC 42423 || |||| | || || ||| | || |||| || || |||| | Sbjct 1909266 CTCCACGACTGGAA--CAACCGCCTAACTGCTGATGAGCAGTTCTTTGTCTCTCACATCC 1909209 Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 | || |||||||| |||||||| || || ||||| |||||||| | | | |||| Sbjct 1909208 TTGCTTTCTTCGCTGCCTCTGATGGTATCGTCAACGAGAACCTCGTCGAGCGATTCAGTG 1909149 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 ||||| ||| | |||||| || |||||||||||||||||||| || |||||| Sbjct 1909148 GCGAGGTCCAGATCCCTGAGGCTCGTTGCTTCTACGGCTTCCAGATCATGATGGAGAACA 1909089 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 | || || ||| ||| || || || |||| |||||| ||| |||| | |||| | Sbjct 1909088 TTCATTCCGAGACCTACTCCCTCCTCATCGACACATACATCAAGGAGCCCGCCCAGCGAA 1909029 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGC 42663 | || ||||| ||||| ||||| || ||||||||| |||||||| |||||||| Sbjct 1909028 CCTATCTCTTCAACGCCATTGAGACCATTCCCTGCATCCGAAAGAAGGCTGACTGGGCCA 1908969 Query 42664 TCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCG 42723 || |||||| || | | | | | || | | || | || || |||||| | || | Sbjct 1908968 TCCGATGGATCCAGGATAAGGGCTCCTCCTTTGCCCAGCGTCTCGTTGCCTTTGCTGCTG 1908909 Query 42724 TCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTG 42782 | ||||| ||||||||| || ||||||||||||||||||||||||||| || ||| Sbjct 1908908 TTGAGGGTATCTTCTTCAGTGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTC 1908849 Query 42783 TCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGG 42842 || ||||| || || || ||||| ||||| |||||| | |||||||| || || | Sbjct 1908848 TC-ATGCCTGGTCTGACTTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTCTTCACACT 1908790 Query 42843 GACTTTGCCTGCCTCCTGTTCTCGAGCCACCTC-AGGCACAAGCCCTCGAAGGAGCGGGT 42901 ||||||||||||||||| ||| |||||| ||| | ||| | ||| || | | Sbjct 1908789 GACTTTGCCTGCCTCCTCCACTC---TCACCTCAAGGGTCGTGCCAGC-AAGCAGATGAT 1908734 Query 42902 CCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCC 42961 || || |||||||| || ||||| || ||| ||||||| ||||| | | || || Sbjct 1908733 CCAGGATATCATCACTGATGCCGTCACCATTGAGCAGGAGTTTCTCACCGAAGCTCTTCC 1908674 Query 42962 C-GTGTCCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACATCCAGTACGTCGCC 43019 | ||| |||| ||||||||||| ||||||||| |||| ||||| ||| |||||| Sbjct 1908673 CTGTG-CCCTCCTCGGCATGAACTCTGACCTCATGAAGCAA-TACATTGAGTTCGTCGCT 1908616 Query 43020 GACCATCTCC-TGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGA 43078 || | ||||| ||| | ||| || | ||||||| | | ||||||||| Sbjct 1908615 GATCGTCTCCTTGTCGCTCTTGGCAACGAGAAG-GTCTACAAGGCCACCAACCCCTTCGA 1908557 Query 43079 CTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGCCGA 43138 ||| |||||||||||||| | | |||||||||||||| || |||||||| || ||||| Sbjct 1908556 CTTCATGGAGAACATCTCCCTTGGTGGCAAGACCAACTTCTTTGAGAAGCGTGTTGCCGA 1908497 Query 43139 CTACCAG 43145 ||||||| Sbjct 1908496 CTACCAG 1908490 >seq6 Length=4141359 Score = 251 bits (278), Expect = 1e-61 Identities = 761/1158 (66%), Gaps = 32/1158 (3%) Strand=Plus/Plus Query 244275 CCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTT-GCTGACG 244333 || |||||||| | | |||| | ||||||||||||||| || | |||| | || || Sbjct 1573850 CCCAGAGGTCCGAGGGCTTGACGTTCCACATGTCAAACTGGAGGATACCCTCAGATG-CG 1573908 Query 244334 GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT-ACAGCTCTCGTC 244392 || |||| | |||| | ||||||||| || || ||||||| || | || Sbjct 1573909 GGAGAACCCTTGAAGGTGGAGTAGGGACCCTCCTCCTTAGCCAGCTGCACGGAGGCAGT- 1573967 Query 244393 GAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCA 244452 |||||| |||| || ||||||||||||||| |||||| | || || |||| | | Sbjct 1573968 GAGGGCAGCGTGATAAATGGTCTCGAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGA 1574027 Query 244453 GGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGAT 244512 |||||| || | || | ||| | ||||| || || || || || | || || Sbjct 1574028 CTCGAAGGGCATACGCAGAGCAAGGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAAT 1574087 Query 244513 GGGTCTGTGTCGCTTGTTGGAGC-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGA 244571 |||| ||| ||| |||| | || | || | || || ||||| ||| | |||| Sbjct 1574088 AGGTCGGTGGCGCATGTTACTGTTGCGAGCCTCCTGG-ACAGGGTAGTGGTTCACATCGA 1574146 Query 244572 TCACCTTGTTGAGGTTGCGGGTGATCATGCGGAC-GACGTCGGCCAGCAGCTGAAAGTCG 244630 | | |||||| |||||||| | | || | ||| ||| | | |||| || |||||| Sbjct 1574147 TGATCTTGTTCAGGTTGCGAATAA-CAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCG 1574205 Query 244631 TACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCC 244690 || | | | || ||| | || ||| | | | || | || ||| Sbjct 1574206 TA---GCAAGCTTCATCGTAGTTGATGA-----AGGAGGGCAGAGACAGAGA----GGCA 1574253 Query 244691 AGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTA 244750 ||||||||||| || ||||| || | ||||| || ||| || ||||| ||||| Sbjct 1574254 AGGTTGCAGACAGCGACCTCGTCAGGAGCACAGTACTCGATAATTTCAGTGCAAAGGTTG 1574313 Query 244751 CTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAG 244810 || |||||| || |||| || || ||| |||| ||||||||| ||||||||| Sbjct 1574314 GAGCTTCGGATGGTACCGAGGTTCTTTTGGTTGCTCTTGCGGTTGCAGGCATCCTTGTAG 1574373 Query 244811 AGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTA 244870 |||||||| || |||||||| |||||| | || | | || ||| || | | | Sbjct 1574374 AGCATGAATGGGTTTCCGGTCTCAGTCTGGGCCTCAAGAATGGCGTACCAAAGCTTCTGA 1574433 Query 244871 GCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAAC 244930 ||||||| ||| ||||| |||||||||| |||| | |||||| |||||||| Sbjct 1574434 GCCTTGATTGTCTTGCGACCCTTGCCCTCCTTCTCGAACTTTTCGTACAGAGCCTCGAAT 1574493 Query 244931 TCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCG 244990 || || || ||| | ||||| |||||| |||||||| || |||| || Sbjct 1574494 TCCTCTCCATAGCAGTCGGCGAGGCCAGGGCACTCGTTGGGGCACATCAGTGTCCAGTCA 1574553 Query 244991 CCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCC 245050 ||| | | || | || |||||| || || |||||||| ||||| |||| || || Sbjct 1574554 CCGTTCTTTTCAACACGCTTCATGAAAAGATCAGGGATCCAAAGGGCAAGGAAAAGATCA 1574613 Query 245051 CTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCG 245110 | || | ||| ||| ||| |||||| | || || | || || ||||| || Sbjct 1574614 CGGGCACGGACCTCCTCCTTACCATGGTTCTTACGGAGATCAAGGAAATCGAAGACATCA 1574673 Query 245111 ACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCC 245170 |||||| ||||| | ||||| || | || || || ||||||||||| |||||||| Sbjct 1574674 GAGTGCCAAGGCTCGAGGTAGATGGCAAAAGCACCTGGTCGCTTGTTGCCACCCTGGTCG 1574733 Query 245171 ACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTG 245226 | ||| | ||||| |||||||| || || |||| || | || || || Sbjct 1574734 A-CATAC---CGAGCAGTGTTGTTGAAGACACGAAGCATAGGAACAACACCATTCGATGT 1574789 Query 245227 GCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGC-CCCTGAGGTTGCTGATGGACATGCCT 245284 |||||||| || |||||| | ||| | || | | | ||| || | | || Sbjct 1574790 ACCGTTGGTACCGGCGATGTATGAGCCAGTAGCACGAATACGGTGCACATTTAGA--CCG 1574847 Query 245285 AGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCC 245344 | || || || ||||||||| | ||| ||| |||||| || || || ||||| Sbjct 1574848 ATACCACCAGCCATCTTGGAGATCATGGCACAGGTCTTGAGAGTATCGTAGATTCCCTCA 1574907 Query 245345 ATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCAC 245404 || ||||| |||||| | | || ||||| || |||| ||||||| ||| ||| Sbjct 1574908 ATACTGTCGTCCTTCATATCAACCAAGAAGCAAGATGACAATTGGGGCTGAGGGGTGCCG 1574967 Query 245405 GAGTTGAACAGAGTGGGG 245422 | ||||| ||||||||| Sbjct 1574968 GCATTGAAGAGAGTGGGG 1574985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334147785280