Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq9 105 1e-17 seq11 93.3 9e-14 >seq9 Length=3473953 Score = 105 bits (116), Expect = 1e-17 Identities = 296/444 (67%), Gaps = 8/444 (2%) Strand=Plus/Minus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCG-GGA 243343 || ||||| |||||||||| |||| | ||| ||||| ||||| || | ||| | || Sbjct 1908942 TCCTTTGCCCAGCGTCTCGTTGCCTTTGC-TGCTGTTGAGGGTAT-CT-TCTTCAGTGGT 1908886 Query 243344 GT-TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 | ||| | ||||||| ||||| ||| ||| | |||||||| || | | || Sbjct 1908885 GCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGTGGTCTCATGCCTGGTCTGACTTTCTCC 1908826 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCA 243462 |||||| ||||| ||| |||||||| |||||| | || | || | | || Sbjct 1908825 AACGAGCTCATCTCTCGTGACGAGGGTCTTCACACTGACTTTGCCTGCCTCCTCCACTCT 1908766 Query 243463 AAGCTCCAGAA-CAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGA 243521 | ||| || | || | || | | | | || | | |||||||| || || || Sbjct 1908765 CACCTCAAGGGTCGTGCCAGCAAGC-AGATGATCCAGGATATCATCACTGATGCCGTCAC 1908707 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | || |||| || | ||| ||| |||| || || | |||||||||||||| Sbjct 1908706 CATTGAGCAGGAGTTTCTCACCGAAGCTCTTCCCTGTGCCCTCCTCGGCATGAACTCTGA 1908647 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 |||||| || ||||| || ||||| || || || | | |||| ||||| | || Sbjct 1908646 CCTCATGAAGCAATACATTGAGTTCGTCGCTGATCGTCTCCTTGTCGCTCTTGGCAACGA 1908587 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| || ||||| ||| |||||||| | ||| |||||| ||| || ||| || || Sbjct 1908586 GAAGGTCTACAAGGCCACCAACCCCTTCGACTTCATGGAGAACATCTCCCTTGGTGGCAA 1908527 Query 243702 AACTAACTTCTTCGAAAAGCGTGT 243725 || |||||||| || |||||||| Sbjct 1908526 GACCAACTTCTTTGAGAAGCGTGT 1908503 >seq11 Length=2773753 Score = 93.3 bits (102), Expect = 9e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 334136 GTCGAGATCGTGTTCCACGTAAGCAGTTTTCAAAACA-TCCGCAGAGGGGAACCCTTCAA 334194 ||| || ||||| || ||| | |||| || | | || || |||| |||||| ||| Sbjct 2042415 GTCAAGGTCGTGCTCGACGAAGACAGTCTTGACCTCGCTCTGCTTAGGGAAACCCT-CAA 2042357 Query 334195 GCTGACCGTTCACAATAGCGCGCATCAGAGTTGATTTACCCGCCCCGTTTGGCCCACACA 334254 ||| |||| || |||||||| ||||| || || || | ||||| || || || | Sbjct 2042356 CCTGCTCGTTGTTGATGGCGCGCATGAGAGTGGACTTTCCGGAACCGTTGGGACCGCAAA 2042297 Query 334255 GACCGTAGCGGTTTCCACGCTTCAGATTGAACCGCGTATTGTTCAGAAGAATTTTTCCAC 334314 ||||||| || | |||||||| ||| || | || | ||| |||||||| || ||| Sbjct 2042296 GACCGTAACGCTGACCACGCTTGAGACGGAGATGGGTCTGGTTGAGAAGAATCTTGGCAC 2042237 Query 334315 CATATGCCAGAGAAAATTCACAATCACACAGATCCTCACC 334354 | || || ||||| || ||| | || ||||||||||| Sbjct 2042236 CGTAGGCAAGAGAGAAGGTACAGTTGCAAAGATCCTCACC 2042197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102873952081800