Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9 143 3e-29 seq6 134 2e-26 >seq9 Length=3473953 Score = 143 bits (158), Expect = 3e-29 Identities = 309/459 (67%), Gaps = 16/459 (3%) Strand=Plus/Plus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| |||| |||||||| |||||||| ||||| || | | | ||| |||||||| Sbjct 1908493 GTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 1908552 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 125872 || || || ||||| | | || | | | |||| |||| ||| Sbjct 1908553 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGG 1908607 Query 125873 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 125932 |||||||| | |||| |||||||||| | ||| ||||||||||| |||| |||| Sbjct 1908608 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 1908667 Query 125933 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATG 125992 ||| || || || || || ||| ||| |||||| ||||| || | ||| Sbjct 1908668 GCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 1908727 Query 125993 GCGTGAATGGTGTCCACCC---CAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 126049 | || || | | | | || | | ||| | || | || ||| || |||| Sbjct 1908728 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CA-GGCA 1908784 Query 126050 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGC 126109 || || ||| |||||||||||||| |||||||| || || ||||| ||| || ||| Sbjct 1908785 AAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGC 1908844 Query 126110 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCC 126169 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 1908845 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCC 1908904 Query 126170 TCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG 126208 || ||| || || |||| |||||||| ||||||||| Sbjct 1908905 TCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG 1908943 >seq6 Length=4141359 Score = 134 bits (148), Expect = 2e-26 Identities = 826/1306 (63%), Gaps = 47/1306 (4%) Strand=Plus/Plus Query 114103 CCACATATCAAACTGGAGGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGG 114162 |||||| ||||||||||||||||| | || || || || |||| || || ||| || Sbjct 1573875 CCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGGTGGAGTAGGG 1573934 Query 114163 GCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 114219 ||||| ||| |||| | ||||| || |||||| |||||||| || ||||| Sbjct 1573935 ACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCTC 1573991 Query 114220 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AA 114278 || || | || | | |||||| || || || | | || || | || Sbjct 1573992 GAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAA 1574050 Query 114279 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 114338 || |||| || || ||||| ||||| || ||||| || || || | ||| ||| | Sbjct 1574051 GGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCGCATGTTACTGT 1574110 Query 114339 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 114398 | ||||| || || || || ||| |||||| | | | || || || | | Sbjct 1574111 TGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAA 1574170 Query 114399 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-ACA 114457 |||||| ||| | || ||||| | | | || | || || |||||| | | Sbjct 1574171 CAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAG---CTTCATCGTAGT 1574224 Query 114458 TACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 114512 | | | | ||||| | || || || || || |||| | ||| || | || Sbjct 1574225 TGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCAC 1574284 Query 114513 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 114572 |||||| |||||||| || || | || || || ||||| || | ||||||||| | Sbjct 1574285 AGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGT 1574344 Query 114573 TTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGG 114632 | ||| ||| || ||||||||||| |||||| |||| | || ||||| || |||| Sbjct 1574345 TGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGG 1574404 Query 114633 ACTTGAGAATAGCCTTCCAGA-CATCGGCGGCTGGCACAGTGGCGTTGG---CTCGCCCC 114688 || ||||| || | ||| | | || | | || | | || | | | || | ||| Sbjct 1574405 CCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTG-CCC 1574460 Query 114689 TCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCT 114748 |||| |||| ||||| ||| || || || || || || || | || | ||| || Sbjct 1574461 TCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTCTCCATAGCAGTCGGCGAGGCCA 1574520 Query 114749 GGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAG 114808 || || | ||||| | || | ||| | ||| || ||||||||||||||||| Sbjct 1574521 GGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAAA 1574580 Query 114809 AGGTCTGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGA 114868 || || |||||||| || || ||| ||||| || || | || || | || || Sbjct 1574581 AGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATGG 1574640 Query 114869 TTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCG 114928 || ||| | || | || || | || ||| | |||||| || || ||||| | || Sbjct 1574641 TTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGCA 1574700 Query 114929 ATTGACCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAAT 114982 | | | ||| | || ||| |||||| ||||||| || ||| || || Sbjct 1574701 AAAG-CACCT--GGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAG 1574757 Query 114983 ACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACT 115040 || |||||||| |||| | ||||| ||| || || || || ||| || ||| | Sbjct 1574758 ACACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCC- 1574816 Query 115041 TATTGGCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCG 115100 | | || | | | || | | | ||| ||||| || ||| ||| ||||| | Sbjct 1574817 -AGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGG 1574875 Query 115101 CGCACTCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGA 115160 | || | ||||| | ||||||| || || || ||| |||| | | | | || Sbjct 1574876 CACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGA 1574935 Query 115161 AGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGA 115220 |||| |||| ||| ||| || || || || |||||||| || || | || || Sbjct 1574936 AGCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCG 1574995 Query 115221 TGAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGAC-GGCGGGAATGTCTTCCC 115277 ||| | | |||| |||||| || ||| ||||||||||| || | || || || | Sbjct 1574996 TGA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCG-ATATCATCAC 1575052 Query 115278 CGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCAT 115337 | ||||| | || || ||||| | ||||| || || || || | |||| | Sbjct 1575053 CCCAGATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGT 1575112 Query 115338 CGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | | | ||||||| |||||| ||||||| ||||| || Sbjct 1575113 CAATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1575158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597350404158240