Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fusarium_20circinatum_20[genbank_20GCA_5F000497325.2_202016-08-02] 428 sequences; 43,948,611 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq9 149 8e-31 seq6 132 6e-26 >seq9 Length=3473953 Score = 149 bits (164), Expect = 8e-31 Identities = 310/459 (68%), Gaps = 16/459 (3%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| | || |||||||| |||||||| ||||| ||| | ||| ||| |||||||| Sbjct 1908493 GTAGTCGGCAACACGCTTCTCAAAGAAGTTGGTCTTGCCACCAAGGGAGATGTTCTCCAT 1908552 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA-----TTGTTGGCACCCCAATCTGTTTGAGG 127345 || || || ||||| | | || | | | |||| |||| ||| Sbjct 1908553 GAAGTCGAAGGGGTTGGTGGCCTTGTAGACCTTCTCGTTG-----CCAAGAGCGACAAGG 1908607 Query 127346 AGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGG 127405 |||||||| | |||| |||||||||| | ||| ||||||||||| |||| |||| Sbjct 1908608 AGACGATCAGCGACGAACTCAATGTATTGCTTCATGAGGTCAGAGTTCATGCCGAGGAGG 1908667 Query 127406 TTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATG 127465 ||| || || || || || ||| ||| ||||||| || || || | ||| Sbjct 1908668 GCACAGGGAAGAGCTTCGGTGAGAAACTCCTGCTCAATGGTGACGGCATCAGTGATGATA 1908727 Query 127466 GCGTGAATAGTGTCCACCC---CAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCA 127522 | || || | | | | || | | ||| | || | || ||| || ||| Sbjct 1908728 TCCTGGATCATCTGCTTGCTGGCACGACCCTTGAGGTGAGAGTGGAGGAGG--CAG-GCA 1908784 Query 127523 AACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 127582 || || ||| |||||||||||||| |||||||| || || ||||| |||||| ||| Sbjct 1908785 AAGTCAGTGTGAAGACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAAGTCAGACCAGGC 1908844 Query 127583 ATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCC 127642 |||||||| |||||||| | |||||| || | || | ||| ||||||||| ||| Sbjct 1908845 ATGAGACCACGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCACTGAAGAAGATACCC 1908904 Query 127643 TCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAG 127681 || ||| || || |||| ||||||| |||||||||| Sbjct 1908905 TCAACAGCAGCAAAGGCAACGAGACGCTGGGCAAAGGAG 1908943 >seq6 Length=4141359 Score = 132 bits (146), Expect = 6e-26 Identities = 825/1304 (63%), Gaps = 43/1304 (3%) Strand=Plus/Plus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||| ||||||||||||||||| | || || || || |||| || || || || Sbjct 1573875 CCACATGTCAAACTGGAGGATACCCTCAGATGCGGGAGAACCCTTGAAGGTGGAGTAGGG 1573934 Query 116124 GCCCTCAACCTCCGCCAATT---CGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTC 116180 ||||| ||| |||| | ||||| || |||||| |||||||| || ||||| Sbjct 1573935 ACCCTCCTCCTTAGCCAGCTGCACGGAG---GCAGTGAGGGCAGCGTGATAAATGGTCTC 1573991 Query 116181 AAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-AA 116239 || || | || | | |||||| || || || | | ||| || | || Sbjct 1573992 GAAGATCTGCTTGTTGAGCTCACGAGCCTCGGGTGACTCGAAGGGCATACG-CAGAGCAA 1574050 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACT 116299 || |||| || || ||||| ||||| || ||||| || || || | ||| ||| | Sbjct 1574051 GGAAAGCATCGGCAAGGCCTTGAACACCAAGACCAATAGGTCGGTGGCGCATGTTACTGT 1574110 Query 116300 TTCGAGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGA 116359 | ||||| || || || || ||| |||||| | | | || || || | | Sbjct 1574111 TGCGAGCCTCCTGGACAGGGTAGTGGTTCACATCGATGATCTTGTTCAGGTTGCGAATAA 1574170 Query 116360 CAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTG-ACA 116418 |||||| ||| | || ||||| | | | || | || || |||||| | | Sbjct 1574171 CAACCTGACTGACCTTGTGCAGCTTCTTGAAGTCGTA---GCAAG---CTTCATCGTAGT 1574224 Query 116419 TACTTAGGAAGGGCG-----ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAG 116473 | | | | ||||| | || || || || || |||| | ||| || | || Sbjct 1574225 TGATGAAGGAGGGCAGAGACAGAGAGGCAAGGTTGCAGACAGCGACCTCGTCAGGAGCAC 1574284 Query 116474 TGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGAT 116533 |||||| |||||||| || || | || || || ||||| || | ||||||||| | Sbjct 1574285 AGTACTCGATAATTTCAGTGCAAAGGTTGGAGCTTCGGATGGTACCGAGGTTCTTTTGGT 1574344 Query 116534 TTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGG 116593 | ||| ||| || ||||||||||||||||| |||| | || ||||| || |||| Sbjct 1574345 TGCTCTTGCGGTTGCAGGCATCCTTGTAGAGCATGAATGGGTTTCCGGTCTCAGTCTGGG 1574404 Query 116594 ACTTGAGAATAGCCTTCCATA-CATCGGCGGCTGGCACAGTGGCGTTGG---CTCGCCCC 116649 || ||||| || | ||| | | || | | || | | || | | | || | ||| Sbjct 1574405 CCTCAAGAATGGCGTACCAAAGCTTCTGAGCCTTG---ATTGTCTTGCGACCCTTG-CCC 1574460 Query 116650 TCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCC 116708 |||| |||| ||||| ||| || ||||| || || || ||| ||| || | ||| || Sbjct 1574461 TCCTTCTCGAACTTTTCGTACAGAGCCTCGAATTCCTC-TCCATAGCAGTCGGCGAGGCC 1574519 Query 116709 TGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAA 116768 || || | || || | || | ||| | ||| || ||||| ||||||||||| Sbjct 1574520 AGGGCACTCGTTGGGGCACATCAGTGTCCAGTCACCGTTCTTTTCAACACGCTTCATGAA 1574579 Query 116769 GAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTG 116828 || || |||||||| || || ||| ||||| || || | || || | || || Sbjct 1574580 AAGATCAGGGATCCAAAGGGCAAGGAAAAGATCACGGGCACGGACCTCCTCCTTACCATG 1574639 Query 116829 ATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGC 116888 || ||| | || | || || | || ||| | |||||| || || ||||| | || Sbjct 1574640 GTTCTTACGGAGATCAAGGAAATCGAAGACATCAGAGTGCCAAGGCTCGAGGTAGATGGC 1574699 Query 116889 GATTGACCCCTTG-CG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATA 116944 | | | ||| | || ||| |||||| ||||||| || || ||| || | Sbjct 1574700 AAAAG-CACCTGGTCGCTTGTTGCCACCCTGGTCGACATACCGAGCAGTGTTGTTGAAGA 1574758 Query 116945 CGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGT-CCCCCGA-ATACGAGACTT 117002 | |||||||| |||| | ||||| ||| || || || || ||| || ||| | Sbjct 1574759 CACGAAGCATAGGAACAACACCATTCGATGTACCGTTGGTACCGGCGATGTATGAGCC-- 1574816 Query 117003 GTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGC 117062 | || | | | ||| | | | ||| ||||| || ||| ||| ||||| || Sbjct 1574817 AGTAGCACGAATACGGTGCACATTTAGACCGATACCACCAGCCATCTTGGAGATCATGGC 1574876 Query 117063 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 117122 || | ||||| | ||||||| || || || ||| |||| | | | | ||| Sbjct 1574877 ACAGGTCTTGAGAGTATCGTAGATTCCCTCAATACTGTCGTCCTTCATATCAACCAAGAA 1574936 Query 117123 GCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 ||| |||| ||| ||| || || || || |||||||| || || | || || | Sbjct 1574937 GCAAGATGACAATTGGGGCTGAGGGGTGCCGGCATTGAAGAGAGTGGGGGAAGCATGCGT 1574996 Query 117183 GAACATACCTTG--GGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCG 117240 || | | |||| |||||| || ||| ||||||||||| || || || || Sbjct 1574997 GA--AGAACTTGCTAGACATCAGATTGTATGTCTCCAAGACTCGCTCGATATCATCACCC 1575054 Query 117241 TGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCG 117300 ||||| | || || ||||| | ||||| || || || || | |||| || Sbjct 1575055 CAGATACCAACAGACACACGCATGATCATGTGCTGAGGGCGCTCGATAATCTTACCGTCA 1575114 Query 117301 AGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATA 117344 | | | ||||||| |||||| ||||||| ||||| || Sbjct 1575115 ATCTTGAGGAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 1575158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613503917736480